From 840863246fb758cb8f1cbcd5fc4735d4860885af Mon Sep 17 00:00:00 2001
From: "R. Ryantm" <ryantm-bot@ryantm.com>
Date: Fri, 7 Aug 2026 04:38:37 +0000
Subject: [PATCH] breseq: 0.39.0 -> 0.40.2

---
 pkgs/by-name/br/breseq/package.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/by-name/br/breseq/package.nix b/pkgs/by-name/br/breseq/package.nix
index 589c5ddeed20..b9f196ea84e9 100644
--- a/pkgs/by-name/br/breseq/package.nix
+++ b/pkgs/by-name/br/breseq/package.nix
@@ -6,6 +6,7 @@
   nix-update-script,
   libz,
   libtool,
+  bash,
   perl,
   R,
   bowtie2,
@@ -18,7 +19,7 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "breseq";
-  version = "0.39.0";
+  version = "0.40.2";
 
   strictDeps = true;
   __structuredAttrs = true;
@@ -27,10 +28,11 @@ stdenv.mkDerivation (finalAttrs: {
     owner = "barricklab";
     repo = "breseq";
     tag = "v${finalAttrs.version}";
-    hash = "sha256-DsDX2oGn7Ex50Wnp1phJjCziCzZIeeZOHriUGJbejsk=";
+    hash = "sha256-txZiyXyhMYXWO5RGrIkqgCS7Dmh34wogKXIfrE3fmms=";
   };
 
   buildInputs = [
+    bash
     perl
     libz
     libtool