Bug: with perl > 5.36, the compiler is more
restrictive with errors. This package has implicit
function definitions. The fix is to ignore the
errors as vep, the main package for that, runs
without issue. Also this package is no longer
maintained
We also add test that were missing from the package.
Not all test can be run as they depends on
other Perl modules in Bioper.
After final improvements to the official formatter implementation,
this commit now performs the first treewide reformat of Nix files using it.
This is part of the implementation of RFC 166.
Only "inactive" files are reformatted, meaning only files that
aren't being touched by any PR with activity in the past 2 months.
This is to avoid conflicts for PRs that might soon be merged.
Later we can do a full treewide reformat to get the rest,
which should not cause as many conflicts.
A CI check has already been running for some time to ensure that new and
already-formatted files are formatted, so the files being reformatted here
should also stay formatted.
This commit was automatically created and can be verified using
nix-build a08b3a4d19.tar.gz \
--argstr baseRev b32a094368
result/bin/apply-formatting $NIXPKGS_PATH
Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions. These are no longer maintained but needed for Ensembl-VEP (annotation
for genomics).
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
