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18.09
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5479 Commits

Author SHA1 Message Date
Florian Klink
b550b7d9e3 pythonPackages.pystemd: init at 0.5.0 (#47517) 
(cherry picked from commit 2be514d5c3)
 2018-10-01 07:36:56 +01:00
Josef Kemetmüller
0f1911eea2 pythonPackages.py-cpuinfo: Fix darwin build (#47558) 
(cherry picked from commit 49dcf7be62)
 2018-09-30 21:19:24 +02:00
John Ericson
37a5fcb775 Merge pull request #47356 from obsidiansystems/numpy-fortran 
numpy, scipy: Fix some nativeBuildInputs  for 18.09
 2018-09-25 14:45:45 -04:00
John Ericson
84fc814982 scipy: gfortran should be in nativeBuildInputs 2018-09-25 14:08:41 -04:00
John Ericson
cfbfb9440c numpy: gfortran and pytest should be nativeBuildInputs 2018-09-25 14:03:30 -04:00
Florian Klink
e2d0b3be8d pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1 
(cherry picked from commit 18c7fbd78d)
 2018-09-25 08:58:11 +01:00
Maximilian Bosch
20d144b58c python3Packages.py3exiv2: fix build 
Recent boost versions name their `python3` shared objects
`boost_python3x` rather than `boost_python3`.

See https://hydra.nixos.org/build/80712295
Addresses #45960

(cherry picked from commit 50f23da8e6)
 2018-09-24 13:53:14 +01:00
Maximilian Bosch
34cafeee32 Revert "python: ldappool: 2.2.0 -> 2.3.0" 
This reverts commit 29acc8339f.

(cherry picked from commit fbeb94dd46)
 2018-09-24 13:17:54 +01:00
Maximilian Bosch
c49fa222a7 pythonPackages.pyftgl: fix build (#47232) 
See https://hydra.nixos.org/build/80705583

Recent `boost` versions with `python` enabled have changed their naming
scheme for `boost_python` shared objects which causes issues with the
proper linking when building `pyftgl`.

Previously the library was named `boost_python3`, no it's named
`boost_python36` for current python (3.6.x).

The same issue applies for the `python2`.

Addresses #45960

(cherry picked from commit 5ad7aedf63)
 2018-09-23 22:39:44 +02:00
Andrew Dunham
0d7c472fd7 pythonPackages.flask_assets: fix tests (#47203) 
(cherry picked from commit e141f7cd2f)
 2018-09-23 10:03:35 +02:00
xeji
abdbf1ccd6 pythonPackages.circus: fix build, add meta (#47066) 
(cherry picked from commit 9c02914b42)
 2018-09-21 00:21:31 +02:00
xeji
175d49256f pythonPackages.nilearn: disable still failing tests (#46918) 
A previous attempt to fix tests failing on some machines (#46850)
was unsuccessful, they still failed on Hydra sometimes while
succeeding locally. Revert #46850 and disable these tests instead.

(cherry picked from commit f3a0c8a3aa)
 2018-09-19 23:50:53 +02:00
xeji
fd0c124cd6 pythonPackages.nilearn: fix test_signal tests (#46850) 
These tests failed on some machines, probably due to lower arithmetic
presicion. Reduce required precision from 13 to 8 decimal digits.

(cherry picked from commit 970393c34a)
 2018-09-19 16:17:27 +02:00
Jörg Thalheim
09d8df5b21 python3.pkgs.typeguard: fix builds by applying utf-8 locales 
ZHF #45960

(cherry picked from commit b224eef108)
 2018-09-19 15:14:15 +01:00
Maximilian Bosch
ff791c8c1d pythonPackages.mahotas: skip test_moments.test_normalize and test_texture.test_haralick3d testcase (#46793) 
As stated in #46368, this package seems to have issues with impure tests
(reported in https://github.com/luispedro/mahotas/issues/97).

Unfortunately the `release-18.09` job on Hydra fails at the attempt to
build this package since `test_moments.test_normalize1` and
`test_texture.test_haralick3d` breaks. Until
the root cause is identified, we skip the disabled tests to ensure that
the resulting package is not entirely broken (which can't be confirmed
with `doCheck = false`).

See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux
See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux
See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175

/cc @xeji @luispedro

(cherry picked from commit 5f2eacccf6)
 2018-09-17 21:34:52 +02:00
Uli Baum
3e10c3705f pythonPackages.dendropy: fix build 
Build failed after update to 4.4.0 because the tests are incorrectly
packages in the pypi version.
Switch to upstream github repo, fix tests, disable failing test cases

(cherry picked from commit a66c00d780)
 2018-09-16 22:26:14 +01:00
Vincent Laporte
8a26f19782 pythonPackages.libnacl: fix build on darwin 
(cherry picked from commit 5b8b9a08e7)
 2018-09-16 09:26:45 +01:00
xeji
a0ba8bba23 pythonPackages.pyodbc: fix build (#46703) 
Build with unixODBC instead of libiodbc, see discussion in
https://github.com/mkleehammer/pyodbc/issues/444

(cherry picked from commit 13c500ae16)
 2018-09-15 23:14:23 +02:00
Maximilian Bode
14ccf337ba salt: fix darwin build by specifying dependency on tornado 4 
/cc ZHF #45961

(cherry picked from commit 2438ceb5b4)
 2018-09-15 12:41:40 +02:00
Uli Baum
5eb4258a9a pythonPackages.nilearn: fix tests 
disable failing tests

(cherry picked from commit d9bdd64f04)
 2018-09-14 10:58:22 +02:00
Uli Baum
297a082708 pythonPackages.wordfreq: 2.0 -> 2.2.0, fix build 
Previous version didn't build (test failure).
Update to latest, tests use pytest now, disable failing tests.

(cherry picked from commit be12bb81aa)
 2018-09-14 10:58:22 +02:00
Uli Baum
837e7c6925 pythonPackages.pytest-rerunfailures: fix build 
some tests fail since pytest 3.7.2 -> 3.7.4 update, disable them

(cherry picked from commit 0bda601ee5)
 2018-09-14 10:58:21 +02:00
Uli Baum
6678badb1b pythonPackages.flask-pymongo: fix build 
add missing dependency: vcversioner

(cherry picked from commit 781eaa1377)
 2018-09-14 10:58:21 +02:00
Uli Baum
25f3b47320 pythonPackages.eve: fix build, drop incorrect dependencies 
Build failed because of dependency Flask-PyMongo, which actually
isn't a dependency of eve as they have their own flask_pymongo code.

- Drop incorrect dependency flask-pymongo
- Drop redunant dependencies already propageted by flask:
  itsdangerous, werkzeug, jinja2
- Drop dependency markupsafe, not required any more

(cherry picked from commit 9e4b0b795c)
 2018-09-14 10:58:21 +02:00
Uli Baum
c2bb2fb269 pythonPackages.daphne: 2.1.0 -> 2.2.2 
Update, re-enable all tests on linux, disable tests on darwin.
This fixes the build of pythonPackages.channels

(cherry picked from commit abe97e9446)
 2018-09-14 10:58:21 +02:00
Uli Baum
77d9ad1f26 pythonPackages.zodb: fix tests 
Tests failed after `persistent` was updated to 4.4.
Apply an upstream patch to fix them.

(cherry picked from commit b54677969b)
 2018-09-13 17:02:31 +01:00
Uli Baum
ae181c387a pythonPackages.restview: fix tests 
Failed after readme_renderer was updated. Apply an upstream patch.

(cherry picked from commit 6dc57134da)
 2018-09-13 11:41:32 +02:00
Uli Baum
c8b1f54b89 pythonPackages.pyfakefs: fix darwin build 
One test failed on darwin due to case-insensitive file system,
disable it.

(cherry picked from commit bd02a1931a)
 2018-09-13 11:41:32 +02:00
Uli Baum
7e47d1a020 pythonPackages.pydub: fix aarch64 build 
one test failed due to rounding errors, disable it

(cherry picked from commit bc036397a3)
 2018-09-13 11:41:31 +02:00
Uli Baum
38f6951e38 pythonPackages.pydub: remove obsolete patch 
(cherry picked from commit 40c469e56b)
 2018-09-13 11:41:31 +02:00
Uli Baum
671205b3e5 pythonPackages.pydub: fix build and tests 
- remove obsolete patch that caused build failure
- no tests were run because required data files were missing in pypi
  version; use github version instead

(cherry picked from commit 80ecef8e4b)
 2018-09-13 11:41:31 +02:00
Uli Baum
a700d468ba pythonPackages.pyfakefs: 3.4.1 -> 3.4.3, fix build 
Update and disable some failing test cases

(cherry picked from commit d2a885a3b5)
 2018-09-13 11:41:31 +02:00
Uli Baum
27159aee90 pythonPackages.readme_renderer: fix build 
Disable one test case that has failed since last bleach update.

(cherry picked from commit bb1f3422e0)
 2018-09-13 11:41:31 +02:00
Uli Baum
2880ca71fa pythonPackages.us: fix build 
Required jellyfish==0.5.6 but we have 0.6.1. Loosen requirements.

(cherry picked from commit a7166cdc35)
 2018-09-13 11:41:31 +02:00
Jörg Thalheim
29f4541a82 pythonPackage.backports-shutil-which: enable tests 
(cherry picked from commit 8d4afa5f2e)
 2018-09-12 22:08:30 -04:00
Jaakko Luttinen
ed0fc7dc1d pythonPackages.libagent: fix propagatedBuildInputs 
(cherry picked from commit d0ce8834ae)
 2018-09-12 22:08:30 -04:00
Jaakko Luttinen
91f488c3bf pythonPackage.backports-shutil-which: init at 3.5.1 
(cherry picked from commit 80b64a2e04)
 2018-09-12 22:08:30 -04:00
Jaakko Luttinen
825f91bdcc pythonPackage.pymsgbox: init at 1.0.6 
(cherry picked from commit c9bf7f67b9)
 2018-09-12 22:08:30 -04:00
Jaakko Luttinen
ff6e4d0369 pythonPackages.ledgerblue: fix build inputs 
(cherry picked from commit 5c9db2f02f)
 2018-09-12 22:08:29 -04:00
Jaakko Luttinen
f8c8a23389 pythonPackages.python-u2flib-host: init at 3.0.3 
(cherry picked from commit 38e86a8f1e)
 2018-09-12 22:08:29 -04:00
Jaakko Luttinen
832dcfdb11 pythonPackages.rlp: fix build 
(cherry picked from commit f053daf36c)
 2018-09-12 22:08:29 -04:00
Jaakko Luttinen
d72f81ed5a pythonPackages.eth-utils: init at 1.2.0 
(cherry picked from commit 9f8e6148c5)
 2018-09-12 22:08:29 -04:00
Jaakko Luttinen
923a6b22e6 pythonPackages.eth-typing: init at 1.1.0 
(cherry picked from commit 541a13ca0a)
 2018-09-12 22:08:29 -04:00
Jaakko Luttinen
735b1e10b4 pythonPackages.eth-hash: init at 0.1.14 
(cherry picked from commit c44504410b)
 2018-09-12 22:08:29 -04:00
xeji
3e31aa326e pythonPackages.BTrees: fix build (#46588) 
a test case failed since the update to 4.5.1, disable it

(cherry picked from commit 68b7de9e2e)
 2018-09-13 02:33:04 +02:00
Maximilian Bosch
f95ddad29f python3Packages.pyowm: fix python3 build (#46549) 
See https://hydra.nixos.org/build/80714323

Version 2.9 requires `geojson==2.x'. To allow 2.4, the constraint
required some patching using `substituteInPlace'.

Addresses #45960

(cherry picked from commit a25dcb6607)
 2018-09-12 01:24:15 +02:00
xeji
dd13aedbdb pythonPackages.pytestflakes: fix build (#46500) 
- disable a failing test case that looks broken
- remove pytestcache depencency that was dropped upstream

(cherry picked from commit f201f8c3fd)
 2018-09-11 11:16:03 +02:00
Maximilian Bosch
7666310ebf pythonPackages.mahotas: fix build, move expression 
See https://hydra.nixos.org/build/80828287

Moves `mahotas` out of `python-packages.nix` into its own file and fixes
broken test cases by skipping them using nosetest's `@nottest`
annotation.

These tests broke from time to time in a sandbox and are therefore
considered impure.

Addresses #45960

(cherry picked from commit ee897b64ff)
 2018-09-10 22:59:10 +02:00
Josef Kemetmüller
9cb6025551 pythonPackages.joblib: Disable flaky test (#46439) 
The test `test_nested_parallelism_limit` fails on darwin.

(cherry picked from commit 6f891ff66e)
 2018-09-09 22:42:34 +02:00
Josef Kemetmüller
3143d6bd2e pythonPackages.fiona: Fix darwin build (#46435) 
(cherry picked from commit 5e0c468737)
 2018-09-09 22:41:12 +02:00