{ lib, buildPythonPackage, fetchFromGitHub, # build-system cython, numpy, setuptools, # dependencies datamodeldict, matplotlib, numericalunits, pandas, potentials, requests, scipy, toolz, xmltodict, # tests phonopy, pytestCheckHook, }: buildPythonPackage (finalAttrs: { pname = "atomman"; version = "1.5.2"; pyproject = true; src = fetchFromGitHub { owner = "usnistgov"; repo = "atomman"; tag = "v${finalAttrs.version}"; hash = "sha256-UmvMYVM1YmLvSaVLzWHdxYpRU+Z3z65cy7mfmDZfDG0="; }; build-system = [ cython numpy setuptools ]; dependencies = [ datamodeldict matplotlib numericalunits numpy pandas potentials requests scipy toolz xmltodict ]; pythonRelaxDeps = [ "atomman" ]; preCheck = '' # By default, pytestCheckHook imports atomman from the current directory # instead of from where `pip` installs it and fails due to missing Cython # modules. Fix this by removing atomman from the current directory. # rm -r atomman ''; nativeCheckInputs = [ phonopy pytestCheckHook ]; disabledTests = [ # needs network access to download database files "test_unique_shifts_prototype" ]; pythonImportsCheck = [ "atomman" ]; meta = { changelog = "https://github.com/usnistgov/atomman/blob/${finalAttrs.src.tag}/UPDATES.rst"; description = "Atomistic Manipulation Toolkit"; homepage = "https://github.com/usnistgov/atomman/"; license = lib.licenses.mit; maintainers = [ ]; }; })