mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-06-10 15:23:43 +00:00
85 lines
1.8 KiB
Nix
85 lines
1.8 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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fetchpatch2,
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pytestCheckHook,
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numpy,
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pillow,
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pydicom,
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pyjpegls,
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pylibjpeg,
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pylibjpeg-libjpeg,
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pylibjpeg-openjpeg,
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setuptools,
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typing-extensions,
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}:
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buildPythonPackage rec {
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pname = "highdicom";
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version = "0.27.0";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "MGHComputationalPathology";
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repo = "highdicom";
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tag = "v${version}";
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hash = "sha256-Tfy7u5MVapRE24CZLFzTnYChnH9JJ9V7FuUhDoktBFc=";
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};
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patches = [
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# Fix time-of-day-dependent failure in series_time validation.
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(fetchpatch2 {
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url = "https://github.com/ImagingDataCommons/highdicom/commit/e9e3f2514a74b0d4be736cff222c934ef66d67ff.patch?full_index=1";
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hash = "sha256-1h9xmcezxuvHw54t4kLahDB62d0XHzEyrmHmPf6NW7M=";
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})
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];
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build-system = [
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setuptools
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];
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dependencies = [
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numpy
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pillow
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pydicom
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pyjpegls
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typing-extensions
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];
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optional-dependencies = {
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libjpeg = [
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pylibjpeg
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pylibjpeg-libjpeg
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pylibjpeg-openjpeg
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];
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};
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nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.libjpeg;
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preCheck = ''
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export HOME=$TMP/test-home
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mkdir -p $HOME/.pydicom/
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ln -s ${pydicom.passthru.pydicom-data}/data_store/data $HOME/.pydicom/data
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'';
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pythonImportsCheck = [
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"highdicom"
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"highdicom.legacy"
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"highdicom.ann"
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"highdicom.ko"
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"highdicom.pm"
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"highdicom.pr"
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"highdicom.seg"
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"highdicom.sr"
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"highdicom.sc"
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];
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meta = {
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description = "High-level DICOM abstractions for Python";
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homepage = "https://highdicom.readthedocs.io";
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changelog = "https://github.com/ImagingDataCommons/highdicom/releases/tag/v${version}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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