mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-08-27 02:34:53 +00:00
90 lines
1.8 KiB
Nix
90 lines
1.8 KiB
Nix
{
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lib,
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buildPythonPackage,
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cython,
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datamodeldict,
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fetchFromGitHub,
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matplotlib,
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numericalunits,
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numpy,
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pandas,
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phonopy,
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potentials,
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pytestCheckHook,
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requests,
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scipy,
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setuptools,
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toolz,
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writableTmpDirAsHomeHook,
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xmltodict,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "atomman";
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version = "1.5.3";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "usnistgov";
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repo = "atomman";
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tag = "v${finalAttrs.version}";
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hash = "sha256-9QDc4V1q179WupJEWYHyP8qs1afoB9OojjkGL1QlS5M=";
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};
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postPatch = ''
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# Upstream limits setuptools to top-level atomman only
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substituteInPlace pyproject.toml \
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--replace-fail "packages = ['atomman']" "packages = {find = {include = [\"atomman*\"]}}"
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'';
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build-system = [
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cython
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numpy
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setuptools
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];
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dependencies = [
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datamodeldict
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matplotlib
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numericalunits
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numpy
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pandas
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potentials
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requests
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scipy
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toolz
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xmltodict
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];
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pythonRelaxDeps = [ "atomman" ];
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preCheck = ''
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# By default, pytestCheckHook imports atomman from the current directory
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# instead of from where `pip` installs it and fails due to missing Cython
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# modules. Fix this by removing atomman from the current directory.
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#
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rm -r atomman
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'';
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nativeCheckInputs = [
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phonopy
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pytestCheckHook
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writableTmpDirAsHomeHook
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];
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disabledTests = [
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# needs network access to download database files
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"test_unique_shifts_prototype"
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];
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pythonImportsCheck = [ "atomman" ];
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meta = {
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description = "Atomistic Manipulation Toolkit";
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homepage = "https://github.com/usnistgov/atomman/";
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changelog = "https://github.com/usnistgov/atomman/blob/${finalAttrs.src.tag}/UPDATES.rst";
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license = lib.licenses.mit;
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maintainers = [ ];
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};
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})
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