mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-09-30 11:50:06 +00:00
49 lines
1.3 KiB
Nix
49 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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fetchurl,
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unzip,
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llvmPackages,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "bayescan";
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version = "2.1";
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src = fetchurl {
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url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${finalAttrs.version}.zip";
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sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
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};
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nativeBuildInputs = [ unzip ];
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buildInputs = lib.optional stdenv.cc.isClang llvmPackages.openmp;
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# Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
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hardeningDisable = [ "fortify" ];
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sourceRoot = "BayeScan${finalAttrs.version}/source";
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postPatch = ''
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substituteInPlace Makefile --replace-fail "-static" "" \
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--replace-fail "g++" "${stdenv.cc.targetPrefix}c++"
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'';
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installPhase = ''
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mkdir -p $out/bin
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mkdir -p $out/share/doc/bayescan
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cp bayescan_${finalAttrs.version} $out/bin
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cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
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'';
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env.NIX_CFLAGS_COMPILE = toString [ "-std=c++14" ];
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meta = {
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description = "Detecting natural selection from population-based genetic data";
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homepage = "http://cmpg.unibe.ch/software/BayeScan";
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license = lib.licenses.gpl3;
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maintainers = [ lib.maintainers.bzizou ];
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mainProgram = "bayescan_${finalAttrs.version}";
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platforms = lib.platforms.all;
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};
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})
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