mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-10-03 13:30:36 +00:00
52 lines
1.1 KiB
Nix
52 lines
1.1 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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cmake,
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gtest,
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which,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "genmap";
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version = "1.3.0";
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src = fetchFromGitHub {
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owner = "cpockrandt";
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repo = "genmap";
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rev = "genmap-v${finalAttrs.version}";
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fetchSubmodules = true;
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hash = "sha256-7sIKBRMNzyCrZ/c2nXkknb6a5YsXe6DRE2IFhp6AviY=";
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};
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nativeBuildInputs = [ cmake ];
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doCheck = true;
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patches = [ ./gtest.patch ];
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nativeCheckInputs = [
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gtest
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which
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];
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preCheck = "make genmap_algo_test";
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# disable benchmarks
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preConfigure = ''
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echo > benchmarks/CMakeLists.txt
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'';
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postPatch = ''
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substituteInPlace CMakeLists.txt \
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--replace-fail "cmake_minimum_required (VERSION 3.0.0)" "cmake_minimum_required(VERSION 3.10)"
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'';
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meta = {
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description = "Ultra-fast computation of genome mappability";
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mainProgram = "genmap";
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license = lib.licenses.bsd3;
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homepage = "https://github.com/cpockrandt/genmap";
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maintainers = with lib.maintainers; [ jbedo ];
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platforms = lib.platforms.unix;
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broken = stdenv.hostPlatform.isDarwin;
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};
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})
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