mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-07-25 10:00:28 +00:00
rPackages: fix strictDeps build for several packages (part 3)
This commit is contained in:
TomaSajt
@@ -437,50 +437,31 @@ let
|
||||
R2SWF = [ pkgs.pkg-config ];
|
||||
RAppArmor = [ pkgs.pkg-config ];
|
||||
RCurl = [ pkgs.curl ]; # for curl-config
|
||||
RDieHarder = [ pkgs.gsl ];
|
||||
RDieHarder = [ pkgs.gsl ]; # for gsl-config
|
||||
RGtk2 = [ pkgs.pkg-config ];
|
||||
RJMCMCNucleosomes = [ pkgs.gsl ];
|
||||
RMySQL = with pkgs; [
|
||||
zlib
|
||||
libmysqlclient
|
||||
openssl.dev
|
||||
];
|
||||
RNetCDF = with pkgs; [
|
||||
netcdf
|
||||
udunits
|
||||
];
|
||||
RODBC = [ pkgs.libiodbc ];
|
||||
RJMCMCNucleosomes = [ pkgs.gsl ]; # for gsl-config
|
||||
RMySQL = [ pkgs.libmysqlclient ]; # for mysql_config
|
||||
RNetCDF = [ pkgs.pkg-config ];
|
||||
RPesto = with pkgs; [
|
||||
cargo
|
||||
rustc
|
||||
];
|
||||
RPostgreSQL = with pkgs; [ libpq.pg_config ];
|
||||
RProtoBuf = [ pkgs.pkg-config ];
|
||||
RSclient = [ pkgs.openssl.dev ];
|
||||
RVowpalWabbit = with pkgs; [
|
||||
zlib.dev
|
||||
boost
|
||||
RationalMatrix = [ pkgs.pkg-config ];
|
||||
RcppCWB = with pkgs; [
|
||||
pkg-config
|
||||
pcre2 # for pcre2-config
|
||||
];
|
||||
RationalMatrix = [
|
||||
pkgs.pkg-config
|
||||
pkgs.gmp.dev
|
||||
];
|
||||
Rbwa = [ pkgs.zlib.dev ];
|
||||
RcppCNPy = [ pkgs.zlib.dev ];
|
||||
RcppCWB = [
|
||||
pkgs.pkg-config
|
||||
pkgs.pcre2
|
||||
];
|
||||
RcppDPR = [ pkgs.gsl ];
|
||||
RcppGSL = [ pkgs.gsl ];
|
||||
RcppDPR = [ pkgs.gsl ]; # for gsl-config via RcppGSL
|
||||
RcppGSL = [ pkgs.gsl ]; # for gsl-config
|
||||
RcppMeCab = [ pkgs.pkg-config ];
|
||||
RcppPlanc = with pkgs; [
|
||||
which
|
||||
cmake
|
||||
pkg-config
|
||||
];
|
||||
RcppZiggurat = [ pkgs.gsl ];
|
||||
Rglpk = [ pkgs.glpk ];
|
||||
RcppZiggurat = [ pkgs.gsl ]; # for gsl-config
|
||||
Rhdf5lib = with pkgs; [
|
||||
cmake
|
||||
];
|
||||
@@ -497,20 +478,10 @@ let
|
||||
pcre.dev
|
||||
];
|
||||
Rigraphlib = [ pkgs.cmake ];
|
||||
Rlibeemd = [ pkgs.gsl ];
|
||||
Rmpfr = with pkgs; [
|
||||
gmp
|
||||
mpfr.dev
|
||||
];
|
||||
Rmpi = with pkgs; [
|
||||
mpi.dev
|
||||
prrte.dev
|
||||
];
|
||||
Rlibeemd = [ pkgs.gsl ]; # for gsl-config
|
||||
Rmpi = [ pkgs.prrte ];
|
||||
Rpoppler = [ pkgs.pkg-config ];
|
||||
Rserve = [ pkgs.openssl ];
|
||||
Rssa = [ pkgs.fftw.dev ];
|
||||
Rsubbotools = [ pkgs.gsl ];
|
||||
Rsubread = [ pkgs.zlib.dev ];
|
||||
Rsubbotools = [ pkgs.gsl ]; # for gsl-config
|
||||
Rsymphony = [ pkgs.pkg-config ];
|
||||
SAVE = with pkgs; [
|
||||
zlib
|
||||
@@ -523,41 +494,35 @@ let
|
||||
cargo
|
||||
rustc
|
||||
];
|
||||
SemiCompRisks = [ pkgs.gsl ];
|
||||
SimInf = [ pkgs.gsl ];
|
||||
SimInf = [ pkgs.gsl ]; # for gsl-config
|
||||
SuperGauss = [ pkgs.pkg-config ];
|
||||
SymTS = [ pkgs.gsl ];
|
||||
TAQMNGR = [ pkgs.zlib.dev ];
|
||||
TDA = [ pkgs.gmp ];
|
||||
SymTS = [ pkgs.gsl ]; # for gsl-config
|
||||
V8 = [ pkgs.pkg-config ];
|
||||
VBLPCM = [ pkgs.gsl ];
|
||||
XBRL = with pkgs; [
|
||||
zlib
|
||||
libxml2.dev
|
||||
];
|
||||
VBLPCM = [ pkgs.gsl ]; # for gsl-config
|
||||
XBRL = [ pkgs.libxml2 ]; # for xml2-config
|
||||
XML = with pkgs; [
|
||||
pkg-config
|
||||
libxml2 # for xml2-config
|
||||
];
|
||||
abn = [ pkgs.gsl ];
|
||||
abn = with pkgs; [
|
||||
gsl # for gsl-config
|
||||
jags
|
||||
];
|
||||
adimpro = [ pkgs.imagemagick ];
|
||||
affyPLM = [ pkgs.zlib.dev ];
|
||||
affyio = [ pkgs.zlib.dev ];
|
||||
alcyon = with pkgs; [
|
||||
cmake
|
||||
which
|
||||
];
|
||||
animation = [ pkgs.which ];
|
||||
apcf = with pkgs; [ geos ];
|
||||
apcf = [ pkgs.geos ]; # for geos-config
|
||||
arcgisgeocode = with pkgs; [
|
||||
cargo
|
||||
rustc
|
||||
];
|
||||
arcgisplaces = with pkgs; [
|
||||
pkg-config
|
||||
openssl.dev
|
||||
cargo
|
||||
rustc
|
||||
pkg-config
|
||||
];
|
||||
arcgisutils = with pkgs; [
|
||||
cargo
|
||||
@@ -704,7 +669,6 @@ let
|
||||
glpk
|
||||
];
|
||||
gmapR = [ pkgs.zlib.dev ];
|
||||
gmp = [ pkgs.gmp.dev ];
|
||||
graphscan = [ pkgs.gsl ];
|
||||
gsl = [ pkgs.gsl ];
|
||||
gslnls = [ pkgs.gsl ];
|
||||
@@ -851,7 +815,7 @@ let
|
||||
rgeos = [ pkgs.geos ];
|
||||
rhdf5 = [ pkgs.zlib ];
|
||||
ridge = [ pkgs.gsl ];
|
||||
rjags = [ pkgs.jags ];
|
||||
rjags = [ pkgs.pkg-config ];
|
||||
rlas = [ pkgs.pkg-config ];
|
||||
rmatio = [
|
||||
pkgs.zlib.dev
|
||||
@@ -1003,7 +967,6 @@ let
|
||||
cargo
|
||||
rustc
|
||||
];
|
||||
yyjsonr = with pkgs; [ zlib.dev ];
|
||||
# keep-sorted end
|
||||
};
|
||||
|
||||
@@ -1113,8 +1076,13 @@ let
|
||||
RKHSMetaMod = [ pkgs.gsl ];
|
||||
RMariaDB = [ pkgs.libmysqlclient.dev ];
|
||||
RMark = [ pkgs.which ];
|
||||
RNetCDF = with pkgs; [
|
||||
netcdf
|
||||
udunits
|
||||
];
|
||||
RNifti = [ pkgs.zlib ];
|
||||
RNiftyReg = [ pkgs.zlib ];
|
||||
RODBC = [ pkgs.libiodbc ];
|
||||
RPostgres = with pkgs; [ libpq ];
|
||||
RProtoBuf = with pkgs; [
|
||||
protobuf
|
||||
@@ -1125,25 +1093,35 @@ let
|
||||
quantlib.dev
|
||||
boost.dev
|
||||
];
|
||||
RSclient = [ pkgs.openssl ];
|
||||
RVowpalWabbit = with pkgs; [
|
||||
boost
|
||||
zlib
|
||||
];
|
||||
Rarr = [ pkgs.zlib.dev ];
|
||||
RationalMatrix = [ pkgs.gmp ];
|
||||
Rbowtie = with pkgs; [ zlib.dev ];
|
||||
Rbowtie2 = [ pkgs.zlib.dev ];
|
||||
Rbwa = [ pkgs.zlib ];
|
||||
RcppAlgos = [ pkgs.gmp.dev ];
|
||||
RcppBigIntAlgos = [ pkgs.gmp.dev ];
|
||||
RcppCNPy = [ pkgs.zlib ];
|
||||
RcppCWB = with pkgs; [
|
||||
pcre.dev
|
||||
glib.dev
|
||||
pcre2
|
||||
glib
|
||||
];
|
||||
RcppMeCab = [ pkgs.mecab ];
|
||||
RcppPlanc = with pkgs; [
|
||||
hwloc
|
||||
hdf5.dev
|
||||
];
|
||||
RcppZiggurat = [ pkgs.gsl ];
|
||||
Rfastp = with pkgs; [
|
||||
xz.dev
|
||||
bzip2.dev
|
||||
zlib.dev
|
||||
];
|
||||
Rglpk = [ pkgs.glpk ];
|
||||
Rhdf5lib = with pkgs; [
|
||||
curl
|
||||
zlib.dev
|
||||
@@ -1154,8 +1132,14 @@ let
|
||||
xz
|
||||
zlib
|
||||
];
|
||||
Rlibeemd = [ pkgs.gsl ];
|
||||
RmecabKo = [ pkgs.mecab ];
|
||||
Rmmquant = [ pkgs.zlib.dev ];
|
||||
Rmpfr = with pkgs; [
|
||||
gmp
|
||||
mpfr
|
||||
];
|
||||
Rmpi = [ pkgs.mpi ];
|
||||
RoBMA = [ pkgs.jags ];
|
||||
RoBSA = [ pkgs.jags ];
|
||||
Rpoppler = [ pkgs.poppler ];
|
||||
@@ -1164,6 +1148,9 @@ let
|
||||
xz
|
||||
zlib
|
||||
];
|
||||
Rserve = [ pkgs.openssl ];
|
||||
Rssa = [ pkgs.fftw ];
|
||||
Rsubread = [ pkgs.zlib ];
|
||||
Rsymphony = with pkgs; [
|
||||
symphony
|
||||
doxygen
|
||||
@@ -1179,10 +1166,13 @@ let
|
||||
];
|
||||
SLmetrics = [ pkgs.zlib.dev ];
|
||||
SPARSEMODr = [ pkgs.gsl ];
|
||||
SemiCompRisks = [ pkgs.gsl ];
|
||||
ShortRead = [ pkgs.zlib ];
|
||||
Signac = [ pkgs.zlib.dev ];
|
||||
SuperGauss = [ pkgs.fftw ];
|
||||
SynExtend = [ pkgs.zlib.dev ];
|
||||
TAQMNGR = [ pkgs.zlib ];
|
||||
TDA = [ pkgs.gmp ];
|
||||
TransView = with pkgs; [
|
||||
xz.dev
|
||||
bzip2.dev
|
||||
@@ -1206,7 +1196,6 @@ let
|
||||
];
|
||||
XVector = [ pkgs.zlib ];
|
||||
XYomics = [ pkgs.boost ];
|
||||
abn = [ pkgs.jags ];
|
||||
adbcpostgresql = with pkgs; [
|
||||
readline.dev
|
||||
zlib.dev
|
||||
@@ -1219,7 +1208,10 @@ let
|
||||
which
|
||||
xdpyinfo
|
||||
];
|
||||
affyPLM = [ pkgs.zlib ];
|
||||
affyio = [ pkgs.zlib ];
|
||||
apsimx = [ pkgs.which ];
|
||||
arcgisplaces = [ pkgs.openssl ];
|
||||
archive = [ pkgs.libarchive ];
|
||||
arrangements = with pkgs; [ gmp.dev ];
|
||||
asciicast = with pkgs; [
|
||||
@@ -1310,6 +1302,7 @@ let
|
||||
libxdmcp
|
||||
];
|
||||
gfilogisreg = [ pkgs.gmp.dev ];
|
||||
gmp = [ pkgs.gmp ];
|
||||
gpg = [ pkgs.gpgme ];
|
||||
gpuMagic = [ pkgs.ocl-icd ];
|
||||
gridGraphics = [ pkgs.which ];
|
||||
@@ -1487,6 +1480,7 @@ let
|
||||
zlib.dev
|
||||
bzip2.dev
|
||||
];
|
||||
rjags = [ pkgs.jags ];
|
||||
rlas = with pkgs; [
|
||||
boost
|
||||
gdal
|
||||
@@ -1638,6 +1632,7 @@ let
|
||||
libxml2
|
||||
]
|
||||
++ lib.optionals stdenv.hostPlatform.isDarwin [ xz ];
|
||||
yyjsonr = [ pkgs.zlib ];
|
||||
zlib = [ pkgs.zlib.dev ];
|
||||
# keep-sorted end
|
||||
};
|
||||
@@ -2030,17 +2025,6 @@ let
|
||||
'';
|
||||
});
|
||||
|
||||
RMySQL = old.RMySQL.overrideAttrs (attrs: {
|
||||
env = (attrs.env or { }) // {
|
||||
MYSQL_DIR = "${pkgs.libmysqlclient}";
|
||||
PKGCONFIG_CFLAGS = "-I${pkgs.libmysqlclient.dev}/include/mysql";
|
||||
NIX_CFLAGS_LINK = "-L${pkgs.libmysqlclient}/lib/mysql -lmysqlclient";
|
||||
};
|
||||
preConfigure = ''
|
||||
patchShebangs configure
|
||||
'';
|
||||
});
|
||||
|
||||
ROracle = old.ROracle.overrideAttrs (attrs: {
|
||||
configureFlags = [
|
||||
"--with-oci-lib=${pkgs.oracle-instantclient.lib}/lib"
|
||||
@@ -2129,12 +2113,6 @@ let
|
||||
'';
|
||||
});
|
||||
|
||||
Rmpfr = old.Rmpfr.overrideAttrs (attrs: {
|
||||
configureFlags = [
|
||||
"--with-mpfr-include=${pkgs.mpfr.dev}/include"
|
||||
];
|
||||
});
|
||||
|
||||
Rmpi = old.Rmpi.overrideAttrs (attrs: {
|
||||
configureFlags = [
|
||||
"--with-Rmpi-type=OPENMPI"
|
||||
@@ -2560,6 +2538,7 @@ let
|
||||
});
|
||||
|
||||
hdf5r = old.hdf5r.overrideAttrs (attrs: {
|
||||
nativeBuildInputs = attrs.nativeBuildInputs ++ [ new.Rhdf5lib.hdf5 ];
|
||||
buildInputs = attrs.buildInputs ++ [ new.Rhdf5lib.hdf5 ];
|
||||
});
|
||||
|
||||
|
||||
Reference in New Issue
Block a user