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Merge pull request #315015 from NixOS/r-updates

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rPackages, R: R 4.3.3 -> 4.4.1 and bump rPackages
This commit is contained in:
Justin Bedő
2024-06-20 16:48:18 +10:00
committed by GitHub
parent 8c811054a5 6f3340bf0f
commit e7d6f2fd25
12 changed files with 5692 additions and 5103 deletions
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12
pkgs/applications/science/math/R/default.nix
View File

@@ -1,4 +1,4 @@
{ lib, stdenv, fetchurl, fetchpatch, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texlive, texliveSmall, tk, xz, zlib
, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
@@ -15,13 +15,13 @@ assert (!blas.isILP64) && (!lapack.isILP64);
stdenv.mkDerivation (finalAttrs: {
pname = "R";
version = "4.3.3";
version = "4.4.1";
src = let
inherit (finalAttrs) pname version;
in fetchurl {
url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
sha256 = "sha256-gIUSMTk7hb84d+6eObKC51Dthkxexgy9aObhOfBSAzA=";
sha256 = "sha256-tMtnXequtymdOyZdIYzeQ/GSlRzluJt7saUUijay2U0=";
};
outputs = [ "out" "tex" ];
@@ -37,12 +37,6 @@ stdenv.mkDerivation (finalAttrs: {
patches = [
./no-usr-local-search-paths.patch
(fetchpatch {
# https://hiddenlayer.com/research/r-bitrary-code-execution/
name = "CVE-2024-27322.patch";
url = "https://github.com/r-devel/r-svn/commit/f7c46500f455eb4edfc3656c3fa20af61b16abb7.patch";
hash = "sha256-CH2mMmie9E96JeGSC7UGm7/roUNhK5xv6HO53N2ixEI=";
})
];
# Test of the examples for package 'tcltk' fails in Darwin sandbox. See:

3
pkgs/by-name/ja/jasp-desktop/modules.nix
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@@ -33,6 +33,9 @@ let
env.INCLUDE_DIR = "../inst/include/jaspColumnEncoder";
# necessary for R 4.4.0
hardeningDisable = [ "format" ];
postPatch = ''
mkdir -p inst/include
cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder

3
pkgs/by-name/ja/jasp-desktop/package.nix
View File

@@ -66,6 +66,9 @@ stdenv.mkDerivation {
"-DCUSTOM_R_PATH=${customREnv}"
];
# necessary for R 4.4.0
hardeningDisable = [ "format" ];
nativeBuildInputs = [
cmake
ninja

9
pkgs/development/python-modules/rpy2/default.nix
View File

@@ -5,6 +5,7 @@
fetchPypi,
isPyPy,
R,
libdeflate,
rWrapper,
rPackages,
pcre,
@@ -53,6 +54,7 @@ buildPythonPackage rec {
bzip2
zlib
icu
libdeflate
]
++ (with rPackages; [
# packages expected by the test framework
@@ -87,6 +89,13 @@ buildPythonPackage rec {
doCheck = !stdenv.isDarwin;
# https://github.com/rpy2/rpy2/issues/1111
disabledTests = [
"test_parse_incomplete_error"
"test_parse_error"
"test_parse_error_when_evaluting"
];
nativeCheckInputs = [ pytestCheckHook ];
meta = {

113
pkgs/development/r-modules/bioc-annotation-packages.nix generated
View File

@@ -4,14 +4,14 @@
# Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix
{ self, derive }:
let derive2 = derive { biocVersion = "3.18"; };
let derive2 = derive { biocVersion = "3.19"; };
in with self; {
AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; };
AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.11"; sha256="1mh8aji48a6fad6bd1333qmc3dw7b5hf4v7xw0zhmfbnld64gz0s"; depends=[AnnotationHubData ensembldb]; };
AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.7.0"; sha256="1nbgqv1c3nyhlniqvqdc5cf8kyys323z1ia5jw54hxwi1jdyclfg"; depends=[AnnotationHub]; };
AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.7.0"; sha256="0hxik2xzvbgv6a936mvax5kyv65drr36r9rf7rlv124jinlbxw82"; depends=[AnnotationHub]; };
AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.5.1"; sha256="02gvrlfld6y03gcw7931fplm220dhnhh12xljb0xm6f3inl0vwa6"; depends=[AnnotationHubData ensembldb]; };
AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.8.0"; sha256="038i0338zyqzkvmhxcdiykb0rwa3bzi0vv18j643b1a64bsnvcxi"; depends=[AnnotationHub]; };
AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.8.0"; sha256="09acd6xipzillw9z68nqqxjxa0hbshclv504na7l2dkhpppx6934"; depends=[AnnotationHub]; };
AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; };
AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.7.0"; sha256="0a14xjhh95pwnyy4c1vij6p63pmgry8fffx4zbirczzzrxsc9cvp"; depends=[AnnotationHub]; };
AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.8.0"; sha256="1p9jxs8ci4yv7yi4n86gpg49jigdmw0nrfnm8ls0jxwm0371vm7l"; depends=[AnnotationHub]; };
AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; };
AlphaMissense_v2023_hg19 = derive2 { name="AlphaMissense.v2023.hg19"; version="3.18.2"; sha256="0622yzywf3655rsh1ckmfvx0crm715a227bg5zz5znz7zfnlsl8y"; depends=[AnnotationHub GenomicScores]; };
AlphaMissense_v2023_hg38 = derive2 { name="AlphaMissense.v2023.hg38"; version="3.18.2"; sha256="080c0282hcls96pd9mjljv2y1y6sy6nhqzlqwl5a2knq1aql4mna"; depends=[AnnotationHub GenomicScores]; };
@@ -133,6 +133,7 @@ in with self; {
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; };
DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; };
EPICv2manifest = derive2 { name="EPICv2manifest"; version="0.99.7"; sha256="1rskd8zhdxvvf119ngsmr6bzrmabhy5zqdh1w5azcyf4c39svp6k"; depends=[AnnotationHub]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; };
@@ -151,9 +152,9 @@ in with self; {
FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
GO_db = derive2 { name="GO.db"; version="3.18.0"; sha256="0znqa724jvrw2xx696n48lx83kzhivfr7fc9awzgm7nigwg3907m"; depends=[AnnotationDbi]; };
GO_db = derive2 { name="GO.db"; version="3.19.1"; sha256="199vk4y069yik7fn25pp73nkhs1vaw9km9rcmm1cirncwm2n0vhg"; depends=[AnnotationDbi]; };
GeneSummary = derive2 { name="GeneSummary"; version="0.99.6"; sha256="0h6afrjb00afrcw6mwslxp7cmwfzp4qfxh0aa4f41kfjd3cymmp5"; depends=[]; };
GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.11"; sha256="1hkvcrp4a2g3yl1h4k5zzj5fhp3d9a1amyn19zr62q9fhj3y47ri"; depends=[]; };
GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.12"; sha256="0md3jl5bz4d2wkvf4yra7rydf5dgykrijrdqwwxc7f77l30nsmgp"; depends=[]; };
GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; };
HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; };
HPO_db = derive2 { name="HPO.db"; version="0.99.2"; sha256="1brzrnafvyh76h8a663gk5lprhixxpi9xi65vwgxwf7jh6yw0was"; depends=[AnnotationDbi AnnotationHub BiocFileCache DBI]; };
@@ -175,9 +176,11 @@ in with self; {
IlluminaHumanMethylationEPICanno_ilm10b3_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b3.hg19"; version="0.6.0"; sha256="1rdkvbpbz8a8bd9ipycfmgn8a3x519abhwywka21ii9ziv3s6ah6"; depends=[minfi]; };
IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; };
IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; };
IlluminaHumanMethylationEPICv2anno_20a1_hg38 = derive2 { name="IlluminaHumanMethylationEPICv2anno.20a1.hg38"; version="1.0.0"; sha256="0vp4m3a7qal4d8qc9xaj7z3x484i33ix4c67qlbw0kskdir7rq5a"; depends=[minfi]; };
IlluminaHumanMethylationEPICv2manifest = derive2 { name="IlluminaHumanMethylationEPICv2manifest"; version="1.0.0"; sha256="1z4b15x8cai27cqhl2lhl02nx0lv8q5c1774vdvvdajx2hivn77l"; depends=[minfi]; };
JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; };
JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; };
JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.7"; sha256="0sayaxsazcsbwdkisjfmkc01piahkqi9xks3rfj60cf56wrjlbpa"; depends=[BiocFileCache]; };
JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.8"; sha256="0di84aydk5brgdz1qh30fh1jizwd8w1rsz74mw4apv5s8ayryl48"; depends=[BiocFileCache]; };
JASPAR2024 = derive2 { name="JASPAR2024"; version="0.99.6"; sha256="1l169kwymylqz67fz182fgq22nvg3cg12p2r8drgibs2d72khcpf"; depends=[BiocFileCache]; };
JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
@@ -198,7 +201,8 @@ in with self; {
MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.0"; sha256="18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; };
MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.1"; sha256="1q9hlva814sjfz8vm9bzw7xzppbcfy5qq7nnz9w742yr59cjb6mp"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; };
MafH5_gnomAD_v4_0_GRCh38 = derive2 { name="MafH5.gnomAD.v4.0.GRCh38"; version="3.19.0"; sha256="1hb905rvxvzh2nap52agcm488yarn2j99d23yxa133jw9d8a9zqk"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; };
MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@@ -206,9 +210,9 @@ in with self; {
Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; };
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.18.0"; sha256="11v6fm2403m32q9k70n5p839a4awks7avcfaa8rvrm59v0ab5czj"; depends=[AnnotationDbi]; };
Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.19.1"; sha256="1zg50j46kka5y0mfgqw3vh5xibd3yk7ay051dnci6mgd7v9gns5w"; depends=[AnnotationDbi]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.12"; sha256="05ydg87cix86hp6hkkqmcniy69q5zyb3xyc3q7bykp26bvrgjvqq"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.18.0"; sha256="15m7qfvz53jkdmx90y7rvy62myr4y3hdy414yqi0w3ch32vy78nr"; depends=[AnnotationDbi]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.19.1"; sha256="0jjba22p8x4cfnihsa3gah3amdr4yrqpfm0zfr990jcjkvf94wvk"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@@ -227,7 +231,7 @@ in with self; {
SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.24"; sha256="0am2r8hn5ybxlvlw7c0i91n5xii0km3iy7d9a0wc9v1ykvk6qmgz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.24"; sha256="1yzywcyk1yngjys9pyykilzw0w4nfxdmwz04w3b17chsbxvckl5s"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SomaScan_db = derive2 { name="SomaScan.db"; version="0.99.7"; sha256="012v0ph9mkdl13111qamzkdfpdklbq94ry6scjhbhjqm4igmz79r"; depends=[AnnotationDbi DBI org_Hs_eg_db]; };
SomaScan_db = derive2 { name="SomaScan.db"; version="0.99.10"; sha256="1qk4frv4hn3pfwbhqd92r8d59ksvgzs9399w4ca7knmij6zzl73p"; depends=[AnnotationDbi DBI org_Hs_eg_db]; };
TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
@@ -253,14 +257,14 @@ in with self; {
TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.18.0"; sha256="0ak6acjll2djamakpn60ks47lfs2y0r8xwhjazj6fvch34xkc2d5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.18.0"; sha256="03wfafd03gni9wpavfwjzfjhx6z8hv4f4jnh4hkjbxqld32sg1kr"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.19.0"; sha256="1ylqdh23767x20npbx0527r353h4kdhc2cz6s2xdadjm3ia8zynn"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm39_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.knownGene"; version="3.18.0"; sha256="061rfyddq15sz684jchvwxww1ipi94xljcgwbz4a92k8i9cnysva"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.18.0"; sha256="0f7392c9zd5489jfsdxvwwmpnzscp70ayxv78gcg50m5mkgwaydv"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.19.0"; sha256="1rhfr4s0lxz86vigrbyyx27q1gbg0g512ld0rkfv2vxwdbcl9hc0"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.12.0"; sha256="036g5zn9rzy8qivb1snhpancsz1z60i3r7z3g91bgla4jpgwwjv6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.12.0"; sha256="0yypv9iqn4i36hnvcr2lsfgaabl8g2pm72ya4psvia261jr2i12i"; depends=[AnnotationDbi GenomicFeatures]; };
@@ -285,15 +289,16 @@ in with self; {
agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; };
alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.18.0"; sha256="197p9dc3rn8vri3frmsrq9r033g2dd0dvbdabgcm8ailyphwpmqq"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.18.0"; sha256="1dv2vrzq6anf422jxa9vssvwc68m1x3cp9543liq3ajprz1alh35"; depends=[AnnotationDbi]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.19.1"; sha256="190yjnl86b6vm2xmdfm43hn5xy7jsf83rwd103v537y4qhxdy0yq"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.19.1"; sha256="1fi4akbk7yc6drkdwp0dfaxdn5axg1c5qp9b445318zszdylxbd3"; depends=[AnnotationDbi]; };
ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; };
ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
ath1121501frmavecs = derive2 { name="ath1121501frmavecs"; version="1.0.0"; sha256="0y3ka95aafiyily188536azvfqrsr2mbljhc696d2wlkjczbxq5i"; depends=[]; };
ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.18.0"; sha256="1s95x4hrv6r1mlsls2yfwbw1mn0jpqg7ancfcwc22p9pi962jjf8"; depends=[AnnotationDbi]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.19.1"; sha256="1qyhzbr81r302xnzg76njwj3b88rrbk02qsxsrg7728qwpwd412v"; depends=[AnnotationDbi]; };
bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
@@ -302,7 +307,7 @@ in with self; {
cadd_v1_6_hg19 = derive2 { name="cadd.v1.6.hg19"; version="3.18.1"; sha256="1g8pk1bmq2p6a7r1skfs54a2b8106znasympyz3dq3vahm5ia0dq"; depends=[AnnotationHub GenomicScores]; };
cadd_v1_6_hg38 = derive2 { name="cadd.v1.6.hg38"; version="3.18.1"; sha256="0088wv3a082ircmgpx23822bvjwqd5jdvilkgvhaypksbnbdkq68"; depends=[AnnotationHub GenomicScores]; };
canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine_db0 = derive2 { name="canine.db0"; version="3.18.0"; sha256="1s88nj0ysvb7dwvxwkshy9w1a8qvaq3bkxki974zhhh42ssdxm2q"; depends=[AnnotationDbi]; };
canine_db0 = derive2 { name="canine.db0"; version="3.19.1"; sha256="0qagfxza04zncjrd97b0mrqrd5jchifv1pxbzv3npdp0801yym2f"; depends=[AnnotationDbi]; };
canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@@ -312,10 +317,10 @@ in with self; {
celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.18.0"; sha256="1b2ypbjxmm6dg5dagc9cka9p1c9n6b9rjlw1ivcakbnpx7ipwkl2"; depends=[AnnotationDbi]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.19.1"; sha256="1qba9s4fmh17b3g6z6jfb2cdby0mhc80xjj0r9a2wvd8qlm5gyw1"; depends=[AnnotationDbi]; };
chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.18.0"; sha256="1y5yi53hld1q3zi3z25zg68mb76nbh09yikn4x14q5rk2imjg9gm"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.19.1"; sha256="1vsb2235k00jxmff9i7lbc3kmiqkz5xvm21bzhryql7kgy5i64yf"; depends=[AnnotationDbi]; };
chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; };
citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
@@ -339,15 +344,15 @@ in with self; {
ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; };
ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.18.0"; sha256="1x0jpi1j5nxvzirrjafg9w71glsshdbw98zrw1zzbp7gxrwxilpn"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.18.0"; sha256="0khajmjawf0gs7bi0m4pnzl1m7p76wdybv9h3fd3p1qjv5dyifwz"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.19.1"; sha256="0fi0cxl5hj5mx2z2r0j86qf3bfx1dz8abn86maim9b1l89whvqwd"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.19.1"; sha256="1kqpmmddqyfjx2y2kbp53mv1vazbjhpwl3crpx2iq0q1b2ynb63f"; depends=[AnnotationDbi]; };
ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; };
fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
fly_db0 = derive2 { name="fly.db0"; version="3.18.0"; sha256="1pksr9jwdd5izf2yc7fb935pic84nvlxa458h0da9lryglc0w5rg"; depends=[AnnotationDbi]; };
fly_db0 = derive2 { name="fly.db0"; version="3.19.1"; sha256="0726vpqc092mq9j23ghvy5yjg3v6fm26fynlad5k4wshyfw1szxk"; depends=[AnnotationDbi]; };
geneplast_data = derive2 { name="geneplast.data"; version="0.99.9"; sha256="1i31kx4kckfg965s9l3pilvmg847av3rpa05aql43259ccyng4hi"; depends=[ape BiocFileCache dplyr geneplast igraph purrr readr tibble tidyr treeio]; };
geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; };
genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
@@ -480,7 +485,7 @@ in with self; {
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.18.0"; sha256="0il4v5r03976qvfd4gq8wdgrp060c1byc3v6wx6yxcxk1wvp81zf"; depends=[AnnotationDbi]; };
human_db0 = derive2 { name="human.db0"; version="3.19.1"; sha256="006q28yvh8l5h7pa9qdhcvjd9049bzg1v5nnvphivwn186hv47ww"; depends=[AnnotationDbi]; };
human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@@ -518,7 +523,7 @@ in with self; {
m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.18.0"; sha256="1zp2j7vbws2a56xkngfl248xskpj5r58q7sxx6xjipdjk8n13vf3"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.19.1"; sha256="0gyx0s801pzhcaa0hqbcj69hjgz63b6d764wiflpdg90c79db2is"; depends=[AnnotationDbi]; };
medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; };
@@ -573,7 +578,7 @@ in with self; {
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.18.0"; sha256="092rjbkrqbkg1997vb4zpyjldv8c541kkx7q95pdpk5qx5aapwqy"; depends=[AnnotationDbi]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.19.1"; sha256="00payj4mc0z5s5iv8ai8w1vg2j68xi12qbg4yxcyjc69vslcgpv0"; depends=[AnnotationDbi]; };
mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@@ -611,25 +616,26 @@ in with self; {
nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.18.0"; sha256="1j9bxz8ypv323wdsp0i0jxv70s14rkq40y1b2n665237rxh0zylz"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.18.0"; sha256="13lrhfyppn5f5jbnnzqwvjfrmg96a687whv2ws2a3h73i18sxfl1"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.18.0"; sha256="0fgrpjfrsw837ay9cq3wd6gp6sxvwjc7r9spfs4m89vqs2xb0bfc"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.18.0"; sha256="1fsbrbby6ka2xdsbp8b10nid99w6lkvb7pyn8gv3dsn8p9p6mc5q"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.18.0"; sha256="0cfj8cg85vgdz7skpvqkbp7a371w95jywwsjvb5am2wb5hzsnwnp"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.18.0"; sha256="1n0rwynw3nl4js104295kff0jk8jwymjk8imm9di6dy6b9s3qsa6"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.18.0"; sha256="1kk5jgbzcqhgwf5p4mpxswqhr9rkirm3fb7maflk61zcn6fs56zc"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.18.0"; sha256="12lqv06n49lwczv5l4h5h6lbfbcqyg9j4csffcdx495scmhc06mc"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.18.0"; sha256="03w6566b3gljs2sjz4ywjkvgr3s33n33877vvmgwapmdwvy6kfs6"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.18.0"; sha256="035pxjcyyhv1nd177vp3kmjjfakzdyf0xmadqqih69almkrvd9yb"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.18.0"; sha256="1jn556ql6xknfd34qz4bqh6bgc9rccmz6pk41p7ivlzlslz7bp21"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.18.0"; sha256="0i35dfllh8wf7b61ajf33gvclzg3znyx3cgp30vs3hm8ys3nras1"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.18.0"; sha256="1qj06dybpqv17vkmd2bk7x3f20a34p4ra054gywbp9klbgmrk60h"; depends=[AnnotationDbi]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.19.1"; sha256="1j8aaraq4wrj633kwfldycsshyygx1k5bvacpha5qg6g7c00bb79"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.19.1"; sha256="0g4b2h08z4fy2wq9nskgp3h5vffs9zk3xx1ax1l86wl16ji2591x"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.19.1"; sha256="0rbbjv47fadc6jgpqrimsd91f35fw6sw8d805vf61nx5xhbl3lpc"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.19.1"; sha256="0vg6nw4qzj8janmkv6k2z471m3l4xnd1h232h0w5i53b20c7p6ys"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.19.1"; sha256="07grx4zgba2q4xgs9x7j3ryy12xkl32mzzgfgivxq68xg7ipj2fk"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.19.1"; sha256="1sqw38z73sgq66x8qrb5xw0jxyimy7l1hs2iwm7xq9ylzrjw3yj0"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.19.1"; sha256="041hp3xhkiwh8vb4zq5kwvrsmp8paqlri6gaj1qy0a5zjlkw0fl6"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.19.1"; sha256="1af2yrbpn58z34jq39qmmwprzsffgxbrs84dsxny4rksa8k6j70s"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.19.1"; sha256="02wbh31iqdywy0gqj43l9faijxagsa3fcgcx7y8mafwpgd7aqr7m"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.19.1"; sha256="0fnxscjps85jmd683212hsp6rs5f4bybcxj8xfqggi4l87fkzng0"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.19.1"; sha256="1xrbf0zmik1j70i6bg5wqvfwz4vcf3vgypan36r1lv6lspsfychr"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.19.1"; sha256="12d8lrf6bxvqzfxzdbxqmjcywy2myhwhi99kxdwpijsczxxfikj7"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.19.1"; sha256="0fz2rrw52nsa2mnl3gmx3ap9zjj0w37zyzwnvxzhmi6wmamr1nk4"; depends=[AnnotationDbi]; };
org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.18.0"; sha256="0fv0l1fj4d5fza936gx187z3b3yd8cjs0hlb3f9vrsv1zadr3yyf"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.18.0"; sha256="1z9wsb7f67mggcsv27zrn50j5c9a3hxc4dygaj2nbma23zxbyjc3"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.18.0"; sha256="15ngfqimrjpn2fxzngj5m3pvqivbq65010qdx33xs32ax48z6p2r"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.18.0"; sha256="0jqrwh4h7shsni9zyygyggmwg89jsc90r7y0gali29yy8wa38h0q"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.18.0"; sha256="01xr4cpjzdd1v0xw8dbmcjhmcwhi8b3vjhmgsx77c969w9sa0igr"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.19.1"; sha256="1klkhazb4rbmnpp3ywj266202740p1c0xsi6dlz84r2cxsrvw1kn"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.19.1"; sha256="1l17ys29ms7iiyflhbk47nvy069rrjpz2f1b5cbfklpr0lzy583b"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.19.1"; sha256="0bq42q2j4jddzi2s4lzhmzplbhkd2drw6545ffhcpi4r7ryrzqkn"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.19.1"; sha256="1sbjwyf0ibivdhhxsaljgqa4lqp3hcf8gcrlcm2vd78bfm5cm7bg"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.19.1"; sha256="0cdql2zvgsrirpby6vahkfxqwnfpbs1hmfl55j8i4n4dv184cbhf"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.19.1"; sha256="0xl3xg4sa5fc7ms6c61pq633y45p2ayh8l02ws1k2yadcmykajrh"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@@ -809,7 +815,7 @@ in with self; {
phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; };
pig_db0 = derive2 { name="pig.db0"; version="3.18.0"; sha256="05lddwcf205gid4ppq9ch5bp7cjdm36c3hfsdm2jddh4a7nky4vz"; depends=[AnnotationDbi]; };
pig_db0 = derive2 { name="pig.db0"; version="3.19.1"; sha256="10s39hcyia1w2wik2yxlalnli8a3bw8siqbrnmfyh0hx50plhhmv"; depends=[AnnotationDbi]; };
plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@@ -839,7 +845,7 @@ in with self; {
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.18.0"; sha256="1g02gq0wwb1f7hmqcpd4ad59xn295zqg1hdzixn20wgkan5yd0ac"; depends=[AnnotationDbi]; };
rat_db0 = derive2 { name="rat.db0"; version="3.19.1"; sha256="0vl2an3b00h94z1ba29fz83q04p4n641qs4xgp53zz3jg8lgm4si"; depends=[AnnotationDbi]; };
rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; };
@@ -847,7 +853,7 @@ in with self; {
ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.86.2"; sha256="02p8ihds0hpcfj5mib0ifql9404svlavfyj36c15jzmbci0rnc8c"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.88.0"; sha256="1fwbf53vklhvqa6n6pijb8xqyv2pap1hskkirnm5c42wmd6g4ql7"; depends=[AnnotationDbi]; };
rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@@ -861,7 +867,7 @@ in with self; {
rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.18.0"; sha256="08l0srvyac33z7ly90pscfh46ms4yfq2pqw502px095qpk0lfvz1"; depends=[AnnotationDbi]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.19.1"; sha256="1687fgxx9rj1ghjg7vhmli360algh6piwafdsi4l347sl1yhklcd"; depends=[AnnotationDbi]; };
rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
@@ -884,7 +890,7 @@ in with self; {
sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; };
sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; };
synaptome_data = derive2 { name="synaptome.data"; version="0.99.6"; sha256="00cqgx06wysz0qyicwnxlc8hpqkj5rwqlyfzsvy7agvcjjkarwg5"; depends=[AnnotationHub]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.15"; sha256="111rg62l8f0k3m0fq8g63lg15agk9bkfcx5z990157cxs0rq07h3"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.16"; sha256="0sd3kwhf9gh74j6qiaf1i2qzgn69i9yyvza26aysiplirbsy1jr0"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; };
targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; };
targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; };
test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; };
@@ -901,8 +907,8 @@ in with self; {
vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.18.0"; sha256="1kiv5a7mxak12m58c7p9m10k4ip6v63ycgj9mfawa8i70cp1dvap"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.18.0"; sha256="1dacnx0bknhgdlaljm9r54dxxbw7vi6pgxhl2dmprkl9k02cc2q6"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.19.1"; sha256="1v24lpw3kfzlzq577vqpqy5bypwfkw1khag7smpq9bgv8dmfcx8r"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.19.1"; sha256="1d6bhq0ppgm087zkh4nmm3qx6f2mp0lblhzvayc6fqyzrzanvjiy"; depends=[AnnotationDbi]; };
xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@@ -914,7 +920,7 @@ in with self; {
ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.18.0"; sha256="1lrni3i2qljkrvpm63rrwhk52m2lr4ci82lxaczbk7spk8yr7mvy"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.19.1"; sha256="00zbg60zn0yzmfdm017al4hbncrlsdfb5syj8mfxha3522q1114h"; depends=[AnnotationDbi]; };
yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; };
yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@@ -923,7 +929,7 @@ in with self; {
ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.18.0"; sha256="0qrd1b5l936jf30dnnmmi5fighwg4zmhz62acq6qzi4r7668g6sk"; depends=[AnnotationDbi]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.19.1"; sha256="1bg35zyxdvdhv0a1l5v61z6g0vz2h2ikad4lyv4akrmwndcrxijy"; depends=[AnnotationDbi]; };
zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; };
@@ -1021,7 +1027,6 @@ in with self; {
SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; };
XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; };
greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; broken = true; };
ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; };
silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; broken = true; };
}

863
pkgs/development/r-modules/bioc-experiment-packages.nix generated
View File

@@ -4,445 +4,456 @@
# Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
{ self, derive }:
let derive2 = derive { biocVersion = "3.18"; };
let derive2 = derive { biocVersion = "3.19"; };
in with self; {
ALL = derive2 { name="ALL"; version="1.44.0"; sha256="1ny5xv338a91gc88a1y5rrd27iawrrlmxhkidvc7xdsbrwd4flkc"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.42.0"; sha256="1sq2j4gq78d68lqlqnd6nxi66gngzqyxicsyv85xp7dhcl59fwbm"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.38.0"; sha256="0hlhc7kvw9n1bnbzingd1475qwivpx64sccnigdij8xdcm1mb4s7"; depends=[]; };
ASICSdata = derive2 { name="ASICSdata"; version="1.22.0"; sha256="01xm27j9c37vqpqz4d9v3bsji1z6ppgf64jja5dd4rz8i3gx9f68"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.38.0"; sha256="1rvw1z3i8jz0x4ca2fy4xg2z97ffalh15prsd38sz4chj9cwybxc"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.36.0"; sha256="10jilz65xba8a43zdvxksll9jpba9a1nj5w266d7laws056m4bh9"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.40.0"; sha256="1kdp39k2s35jb3wp4qqm0lbrz94dxz1s9yygv8frfc70xv4hh7af"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.40.0"; sha256="0h8i38qh3krw02v5x4rybh0pmfriy5l3ji6ahk2j0hgjfgq55z5b"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.40.0"; sha256="01zgyp6yy980iyqan7f9qiv7pqzkr4cjli9q5ncig085afp2j88r"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.42.0"; sha256="028473p5k69vmm8nh0qpmq30cyjcjaccclnsc7crr6brg2xjzcb6"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.30.0"; sha256="03kp8qkqy2wph7lbzawgnh83qjm31ih1jp986qwphfhkfk125wg0"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.32.0"; sha256="0yin4q6bjhbh6a6xb62ac5w0kjb23y3kslrpkf9prr1cz42kvbjx"; depends=[]; };
AssessORFData = derive2 { name="AssessORFData"; version="1.20.0"; sha256="0lp80w5msdisic9j827wq7gsi9v6vnrchrlcmr2h5vd26plia98x"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.40.0"; sha256="052r8snjwqzn49gjwv1fv5vhwl14vcmzwjxb4jgsbnb14wyhiliy"; depends=[beadarray GEOquery limma]; };
BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.10.0"; sha256="088c6ikr7cslpx8yx89d3y00zigy6c21qa1m3dlrynghh7z8xi8w"; depends=[ExperimentHub minfi]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.10.0"; sha256="1xgm9n01if7rb6lsgj4cg5dbjl8kq6zvkj4324vrwj1c1mdaa9nv"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; };
BioPlex = derive2 { name="BioPlex"; version="1.8.0"; sha256="0wwsbv4kyi67favswb5jrcgjv6a02s8gvwc23918y0rlcmkx07m7"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.22.0"; sha256="1ya62fx76ifnbdbws51nw544n12sk4a35qichfc54v0ffbz0n38c"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
CCl4 = derive2 { name="CCl4"; version="1.40.0"; sha256="02fw0c7yy6vch31a726fpn163mi5zj13jvrpczqqshb2wz2qs58c"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.42.0"; sha256="10l2a562l6hx32sxmvy8z59shq87v770rrh2fhddnj06dpx6n6cf"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.22.0"; sha256="16k05g98j2zs8n827kvgishzcj0zcx12cwzvgznzjrwp56dl72xs"; depends=[ExperimentHub SummarizedExperiment]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.38.0"; sha256="0f85l5alhzb14p30pmk11lv0wn6n4nsx8l9pc545fkwqdm5bsqh3"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.30.0"; sha256="1gjsbrrz06qsa0lwjiil0qprhiajyy7im5wh6xks0ifs8rl9f9y4"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.38.0"; sha256="1mkxf577xa7k1cflrwbdngj6kfhdz2a1dg04x849zm6ahmd3x9vf"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.38.0"; sha256="0c4nmzdhg2mam134j5p7g5h4g2f08aqj429b03cz83znqy4k25vl"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="1.22.0"; sha256="1wa9988sv5maml0v0n893m5vf773z0z530dpp5cjk02cd40npcrn"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.34.0"; sha256="0cyzzyki6y2a7m4w7pk7x532a0i539irmpxbba3zs05cjs3213sb"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.28.0"; sha256="12mx1m4lm51y8pazmhrd8ickvvpa2sm9cg2znhs6pzmgc5bj09dx"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.34.0"; sha256="175vsg2bh578fdrdchcma5q3jq7cfxa8b7g8954xv6fxrwcj0ffz"; depends=[BiocGenerics GenomicRanges]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.22.0"; sha256="1akqpqw9ydf23whr346psciyyp9c3r0rsas1rkdkf8g5wrcj9vhk"; depends=[caret genomeIntervals randomForest]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.40.0"; sha256="0i96lkgkzssrsa0gnc5l4f9j4x07cvq4s019v3b2fm5s288lvsnj"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.26.0"; sha256="1v35xq0a58kf0nabv3v6aiz9cd3gvwv0asmvq27ha0w1ngwd0dzk"; depends=[]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.18.0"; sha256="0xahy0l8b8c7xgg6481vhliiis63brh3rszaj5d1f7sjbgzj7ahs"; depends=[]; };
CoSIAdata = derive2 { name="CoSIAdata"; version="1.2.0"; sha256="07x44vn6r1d0ixfzx9h3rzzn9gjjci59c41xhqn2b3k6f5c7fa9r"; depends=[ExperimentHub]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.38.0"; sha256="0ixvmkyps62f10c0s4z0jas2106hnvijknai6abial6i3plffnsc"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.20.0"; sha256="11l994nhi813qs1vmrqjgclw11k5hrsmcrlj5x5wqmqmnjjw1dsy"; depends=[ExperimentHub Rdpack]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.34.0"; sha256="1zfsxi65lln93fb87l6fgp7vxldb4fvnf95h91dl424xyq6qjp1h"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.32.1"; sha256="1iwiq5z1jnsrdp3pnhxlb2rvcfg91xp7xp2k0ry7r0gr9hjnnhr7"; depends=[MSnbase]; };
DExMAdata = derive2 { name="DExMAdata"; version="1.10.0"; sha256="1a2hrvbkhpwmjha0iwd17xv60d1cdl7iswc942bcac80mn6sw305"; depends=[Biobase]; };
DLBCL = derive2 { name="DLBCL"; version="1.42.2"; sha256="06x4jbyz0m9pzwxjl326rl5zahq5km5rryncbq99cz6mml2asn21"; depends=[Biobase graph]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.20.3"; sha256="0fhk71j60s693vh333277ra0vgjys15h6r593v2j1y970650pq0a"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DNAZooData = derive2 { name="DNAZooData"; version="1.2.0"; sha256="0d5466b830s82laamig1rw0p0n6i4npb11iyziv1sfvs4y8pbhl8"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.38.0"; sha256="1xjygkr8rc1m9sv5bwph3wdf9hhcfdw8zji547nw0ayrg5d49689"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.34.0"; sha256="1qsvw7jrn070yfrgrkw9wsdb05g8ai5hmcqmyr78qs5qny0cz919"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.40.0"; sha256="0pxxg6rkdgafxj71mvlbm14vzv414hfh2p24rhyby7glrkzh2vq0"; depends=[EBImage]; };
DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.12.0"; sha256="0a68xd9ks83a13s1cckmhrc50ijp7dw19yjf37v253q50xjp0z03"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.38.0"; sha256="03g6syilb9v9cr2snh5w02ng6drff5i86drbmhv24yabwfgp3ndi"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.20.0"; sha256="0248jc4frjwbv5vq0483s2flbrnd70x4bkad7aphfxvrk897sn9v"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DvDdata = derive2 { name="DvDdata"; version="1.38.0"; sha256="16352h34az5sjq0bfgx9qs9njkn3nqws584cm1yydh2v60fclv63"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.30.0"; sha256="0m281qwvz1cdfjf605czammw107x23pjpqh1adx5rvacpzgd8gli"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.26.0"; sha256="0vwzj98pds0n3wc74y84d8srb1rvvf7kn7mjy4zf4d0qrp92sa94"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.40.0"; sha256="06mzals24cc4fl5j2w8mwa1s7q98qm80g7gnr5rz4hj66kmiak94"; depends=[GenomicRanges rtracklayer ShortRead]; };
EpiMix_data = derive2 { name="EpiMix.data"; version="1.4.0"; sha256="15qc8jjbv6b4nxszrj8lkj6cmbvvxlvknksp5pl13s3y176gm4d5"; depends=[ExperimentHub]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.38.0"; sha256="01qz41q2cw4g7yg4nj7dlqsw6p8bh7dvm22a0vgp5dpm2pjagh15"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.30.0"; sha256="0pnw0p2n9r1r0a7b1g32s7s2abbvdc976igdf48agkmilkhzpbb4"; depends=[]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.12.0"; sha256="13xzypr95v5b3kynfn45b7rpg7kd0gcqmx3ap377plqs42nc7pa6"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.38.0"; sha256="04rvri7hcc5qd29c0xbkvjylh2x9flk7hf8rngd01fbhk9myxsaj"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.38.0"; sha256="1zp7wafibklwc7gr827yk1m6630c4r11nvy1i8jjhriqrjd4hnpn"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.40.0"; sha256="08xli4a24kkyy5q1ka0vyrpk11yfkyp0gxbs0k8khycppsq9s9sn"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.6.0"; sha256="0vfx1kpy02640nkkkpksisznybv0xb6jkvvkwsybsggcr2rdkl89"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.30.0"; sha256="04fx8mc21lflbxdz7fgz0jl30jk4gd09qqn5a654jlqhllnkg9rj"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.18.0"; sha256="0gl0dwhabdik17al1f1zq2vhg3bgbirxmsa1lxfv97vq08nqfshl"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.28.0"; sha256="16hrhakaxhhilfy5gb0yrwijww8ph20i3qnfkrhhz6gjqh0iyri2"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.38.0"; sha256="0dj0gcz8mfd0ilihhysrbrzbkvfpwy1dx56g4dsizkg0k6aa8nha"; depends=[minfi]; };
GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.20.0"; sha256="0qisi43rbjg9y2fglkri3bb1wxn4rcylhlidw2ml4bl7d36rfxdz"; depends=[]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="1.22.0"; sha256="03ccpc69k0i0pffw0x0f49h71saz68chyppa8ncpyb5aj4lxp2gb"; depends=[]; };
GSE103322 = derive2 { name="GSE103322"; version="1.8.0"; sha256="018k8vkyr0cvycvkihkajf709jsw0y9mhf8yamzc72x5mwazwhym"; depends=[Biobase GEOquery]; };
GSE13015 = derive2 { name="GSE13015"; version="1.10.0"; sha256="1jc40g1gxz7rcxcgx11blx9li3fpa605rzs9k2glaglrp373r7dk"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; };
GSE159526 = derive2 { name="GSE159526"; version="1.8.0"; sha256="0z8aywaihmrzfn0pzm5z7pxkpmkrar4090wavvy4vzkqbzdicv8r"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.30.0"; sha256="03wy4jjg6fh1fckmy0fqs776b3mhvrksk7hgkrjg7hr7p9b9dxwp"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.38.0"; sha256="1a9kspbmsnsrisy5xp5r3s1l7fz34v7riyiqn22hlc87zmnj7y5q"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.40.0"; sha256="0lprcr2r0qzi7pa9pl6cp21z7vkjpn0d6ynnbbzji9ga82hd2njq"; depends=[GWASTools]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.10.0"; sha256="1c9pqmdnnpm80zzsbl3j66xdwb3kzn7jkisx31sn5jaxzc660jc4"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.30.0"; sha256="12253pncfqvq7c1ajkdgfn4f861w2zk3j6p5xyra7c0d0z47a2b6"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.18.0"; sha256="1rd1qra8g7dn9pg2mhh2j40p7p6ny838n4w6mx5ryw4xky95lf41"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HCATonsilData = derive2 { name="HCATonsilData"; version="1.0.0"; sha256="1h5hrfslhyiqc855bb23rz9hahnpcy47h2lz1k0dj8glrjldq0jp"; depends=[base64enc ExperimentHub HDF5Array htmltools rmarkdown S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.42.0"; sha256="1xxc85al19qxj17rj1k4q0xp3wgkxr007akmq3an7mqrah0y8hm8"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.22.1"; sha256="1048xgypsw257ihy0ysfxy5443dzhzp2rkjjvpivvrhw4dzl25ir"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.40.0"; sha256="1xijrm32p191qydz1gkm8321b8ycb9h6y6m1qvc8shlhbbzw705h"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.42.0"; sha256="0kyblhc6fdc5c45qyqcr2qnmp1zrwdrc0j91fml04pw5yxrf6dw0"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.22.0"; sha256="1ns7yyw0w8rrkw87awrrzxmb44gkkb1cn6j3cbzj8fbrd9whl30d"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.16.0"; sha256="1xrvslsybzy1zjvck6imrjxzd0hsiyx4ly71ndirxs7yhh13d1qk"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.22.0"; sha256="1nf6jsjvy3qacwz0dl5jc9h87xhj9q73b0g49c2yrxvv1dhayq0i"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.30.0"; sha256="0mqv76lj2amb18k5533r6lc42g4a0jggcj7h2dh1lk1hl973asqg"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.24.0"; sha256="1sfb7kzmwdvv71bf56z6sd81dfrs4v53igmnxphrvjiymdjxrb3b"; depends=[ExperimentHub]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.28.0"; sha256="09jrcwrn5vjsva2fz28193llhrysswhxyq83rczi5dnimr5qqnxc"; depends=[]; };
HiBED = derive2 { name="HiBED"; version="1.0.0"; sha256="1cacjpghp5zbbcvn0fpfyhg56dx9bfa8d2qwf1dvbmwwcm85l0vw"; depends=[AnnotationHub dplyr FlowSorted_Blood_EPIC FlowSorted_DLPFC_450k minfi SummarizedExperiment tibble]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.22.0"; sha256="1jy5hpq8vdki23yy3ivlhqj6k80z1rnby4xrk83wk0rxiz4sdxix"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.38.0"; sha256="1a6kf55sqqpqs3gk76np9payqj9i75ggn06iy46cazslnhnvmdvg"; depends=[]; };
HiContactsData = derive2 { name="HiContactsData"; version="1.4.0"; sha256="07i91rz7bn6g27wbjrwgck3mdmj8lrsdda6pza9k1ghh5zssrx7i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.14.0"; sha256="1zz6xqn9amlh7v7v8c67i4n94lxc8w46g3gqnhbrlcpi6zid36a9"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.38.0"; sha256="04ywn2nw551x082v9pxglxl83kfccsds566lwkpa87098i4wdx85"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.28.0"; sha256="0g24nr0jdw6509xjski83jf2r35iklmnhqikmfr90ki4rn0fqar0"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.30.0"; sha256="06qbcnq2i0qjc4xqld3gd8746qpvxy4avqba82vzdk0h95kxirmj"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.40.0"; sha256="0fzx2qqykma2r2ds53wik4kb9a0wvybr63vf34s91731k21mgsqn"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.38.0"; sha256="1h0qcdmyd22x5y5iwi1w89ppb1k3nb2awwim1lcxgdinab8km52b"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.40.0"; sha256="08fb7aywjjka5lrpb46cd322sfnhcch5ilf5aq0a2sdq12m2psyi"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.44.0"; sha256="1zahcx2kjspm3bvgxklfgd34srlrxcq9xcj37qa20b08892llkk7"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.38.0"; sha256="1ha5nm4v28bfxxa6jqkag7hy0b7bph15v1qs8xwd9w2wam2znazx"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.30.0"; sha256="0dyx29f7jnyqcj85j2yrl8jcphi2kymx2y2mk7ws25xcahl5zzpy"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.22.0"; sha256="1rmn5zx5p4c8is5dd80nppl1r8ciyccwhiir0312bpaaplyc9qks"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.40.0"; sha256="05s6cq27cdw9w9laq5hxjiynjavd873w2idpwa1k4kw0rdsni8cb"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.28.0"; sha256="1dflsvfz7c2ahs60s4wx8mc9ar8qrz9ax8g9m67jchygcmqs4jla"; depends=[]; };
LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.10.0"; sha256="1wad78cpgf9pl8hl4issb0k1m0dlrk0bradkdz5b5a5pamlwh82c"; depends=[ExperimentHub]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.40.0"; sha256="06qifvjaxjz51p2vkfdzxjbj5040772y3gzc0qpzsh5fapprkxv9"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.34.0"; sha256="15v80d554pai4584dhy3nzwva38b9r6997br7xqysj7v8x2f4392"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.38.0"; sha256="1d0zfx6sqwanyh67996v008sjkscskm5z24n9siklc9w416nqa63"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.40.0"; sha256="0yr7l7964nkwlz6s9hsdab2sihrngk9wqakrn4pm5h8m15f8ls46"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.28.0"; sha256="0rp1zp14wvfwy67m0ph8amm41frj76gfylacdbdjyblcpdgzzlnq"; depends=[]; };
MACSdata = derive2 { name="MACSdata"; version="1.10.0"; sha256="117jy39rn972hzwcckx5wdsrsxfzhwbx4wb6air4l7xcb6qmfrj1"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.40.0"; sha256="1qqn4mf2jrdkn28n1npzag50m24j29nm0adcj276s8fgwdayv434"; depends=[affy Biobase lumi]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.40.0"; sha256="1bb158bmy7195wnj0wap08g621xbzflvj30pv4l7mwc54lm1vqfx"; depends=[Biobase lumi]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.38.0"; sha256="1lrxg5vrfqxrnnpn8m3ypk3ikc6pa7pszxfi08gaa3a4c2glcc4m"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.40.0"; sha256="0ni928njn0hm38njgbnz223pvpq1318si12z5d56h3cczi2f3a37"; depends=[]; };
MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.16.0"; sha256="16ang08nc4jw8m4faacd0rhv47h5wlp771nd6d8bn1r6d5b9si3w"; depends=[Rsamtools]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.38.0"; sha256="1awhcc4zjmzwqc35xv1l2alybbnv1b16bbxn85xywdq0qyj8zgxp"; depends=[]; };
MOFAdata = derive2 { name="MOFAdata"; version="1.18.0"; sha256="1pl593dlf87g88bdabqqn2a9b1vkgg4znp1l9wbyk49a35l2rqy1"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.20.0"; sha256="1nq9y7c3y0q1040fzsg5hiavqq4n1778cry420f03db1yg40lns0"; depends=[tibble]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.22.0"; sha256="1q8bqqpc14iymmmmv87yqzkpjlzq4r801hjav8kymsw66zlqi0rq"; depends=[]; };
MerfishData = derive2 { name="MerfishData"; version="1.4.1"; sha256="055wmm0r8wyv8i2kil5f5lh5n2kjw36q4yrpqswf0fvdsvvrpaak"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.22.0"; sha256="0b0s7g4ijqlsfbr8wdrs1g54hba9ry6i1af71ly0v6l7ff0j65r1"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.22.0"; sha256="0k144fi1i9c1rlsif2pfk4lyzk25lkpfp1c4yanqqzbij8z50y6k"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.22.0"; sha256="0a5daghij0c6ykdh2vvd0gmrinqbvnn2hm8apga768ib04ylhb13"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; };
MetaScope = derive2 { name="MetaScope"; version="1.2.0"; sha256="0wpp2h3zldvcw9r8bjbbpcvkd3hgh11dp8qalcbm36kx4djc2d1a"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tidyr]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.34.0"; sha256="0kn20wsij54c3i2w3yai97qqmnbawsz0326ai5zrlkalkra4w1r9"; depends=[MethylAid]; };
MethylSeqData = derive2 { name="MethylSeqData"; version="1.12.0"; sha256="0bw450ada6nnz19d2b9qvx0szyldswrsmy21vsm0dw7idh4xfj6c"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; };
MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.4.0"; sha256="1546ccbnz86scdslf17rzsvyc7h0pb4mw77b17jicfwr8h4qff25"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; };
MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.16.0"; sha256="0m03wrqgfhlyc0rmjjcj8b9gcc2rv644hffnff3j1bnkjg5rldi0"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.10.0"; sha256="19p7a0k565yz5201klib85z2gwqss0ywbv66sh0bvk4g5cmd9k0y"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.38.0"; sha256="1haia26flsmh553z0pn4zh4s9w3smkl5q16hmz4vpfwkgc3f9506"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.22.0"; sha256="0858c5cqkjlk55whiravwmnia26yfkgw4656zfscpdfz2n9xm50m"; depends=[]; };
NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.12.0"; sha256="0jvwl6k12acinwsvs62vx7dpnhjbcvhf8sbdw13gwwknrn96hgh4"; depends=[ExperimentHub]; };
NestLink = derive2 { name="NestLink"; version="1.18.0"; sha256="1nr7ddlrbd4q963750x3cdnn7y6mf2y5q3v37ilhfplypnynlgy1"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
NetActivityData = derive2 { name="NetActivityData"; version="1.4.0"; sha256="1h3ih2y9jl5d3xk5fydgs9s9bsny3lksn67jxmrksxxrabr5zknl"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.40.0"; sha256="0an77i7z2pqrgizd0z5n4iihg9zp3xbl8rgnfphsh9q3fbvwp185"; depends=[annotate Biobase hgu133a_db]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.8.0"; sha256="0gvx81w5krzdzz4v09qlscr0hklzmxq2pz4slwwy1dflq0rjswk5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.20.0"; sha256="1jbdyxqyjp4yn6ywk80gin29wi5szwnz661l9hb8gcfbmhv5m1sv"; depends=[MultiAssayExperiment]; };
ObMiTi = derive2 { name="ObMiTi"; version="1.10.0"; sha256="1sgl38mbnv99miy6n2gps9r5dzhadf1gvin95nif379kdq6xl0nz"; depends=[ExperimentHub SummarizedExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.24.0"; sha256="0ynb0n4d1ic1xhnwvqxvncr3vm5kwl3y0771rivrz6rrynfchy4c"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.30.0"; sha256="19xzn1agfn34y16prfcgwzbz40bw654zj28lhamiv2mvljxy60jx"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.42.0"; sha256="1ps8m8g0s5vsxhhr80ylxcngnn7xipfc70cyxszwmhcwgy1ghwja"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.36.0"; sha256="02aiy2qb62r8qgi5gaj2scra46qgf4wh3lzpqvsxbi7c2glnp7ig"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.36.0"; sha256="0fr775h5k98xspmjpyf363dav38j7cixnmhapfsy8ijijyl4g8jw"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.36.0"; sha256="1gwmilyikslgp56xrff2sqqm32lmdq589cya19cm0yi7pa17fqdw"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.30.0"; sha256="17482ypqdvgc6p3fvkfdwfcpm3gn4rfd6zjsnlbqc99dpikq13sr"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.38.0"; sha256="07wq6526ihrzmyk2rql0zpkr6qkg6rdkk2f03lxkaq7fsbidb03q"; depends=[]; };
PepsNMRData = derive2 { name="PepsNMRData"; version="1.20.0"; sha256="1xy05yd2nzrl2s0bjsr9y94rwcm68gglbijxplalyy3ppcwwm55c"; depends=[]; };
PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.16.0"; sha256="1r51zrvm8n7w66ii97wz6ncz0d7s473ppdn8b958mh15w81rk5fr"; depends=[BiocStyle Biostrings ExperimentHub]; };
ProData = derive2 { name="ProData"; version="1.40.0"; sha256="099xf8143k2z74nb1hdlswrv1gjmg41255x0njxa4wzdwlpyp5k2"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.28.0"; sha256="1rx0sg5nz7i20d74y0cq6nybc1q62h0d9rpi3dk02jfngk3zzb5d"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.32.0"; sha256="01fnbbkyfpim0xh6v0bm553pmrg9n3bnwn4adds0p47lai1n7dr8"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.32.0"; sha256="0x54ncmxqb1qci41qy7q9gskx7zp1rcpad3wvil023h81l1s5pg6"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.30.0"; sha256="0apbndslrdrflmwvz456q31x3mr1p7v7kpbl0fp0hajadjb38aha"; depends=[]; };
RGMQLlib = derive2 { name="RGMQLlib"; version="1.22.0"; sha256="1sys8vji70mkd100zy84ywv6ralr5k7z1044rn03wp75s1h8klwy"; depends=[]; };
RITANdata = derive2 { name="RITANdata"; version="1.26.0"; sha256="0jkcf4g2h6bpx0v8ybwnrni3qq9hajxxprfq9pszpmf4xb9cmgs2"; depends=[]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.40.0"; sha256="190q4q8201i1v3bb4snasxy2kbwvnppq9kpqmxa1hg9mlvk643fq"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.40.0"; sha256="0s5bb73ixp2zhzj0ssq3kai6ijrpn9flg23f1n2vsi2vf66wfajj"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.16.0"; sha256="0p9x1j4ra11banvifh5z07i26b2s59b2knbgj44yx4qi0d3cnn81"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.40.0"; sha256="1gdwsbkjnb3927ihq2gbwrksvhm61wm114bwhazypmpnnwcfv27f"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.22.0"; sha256="1visrkyxljp3d7h7qgf72l71w91vah93qmi733s15zmsm090sf1c"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.30.0"; sha256="0akfifgkkhzrrw21gxm4h2liam5f7rd2ghidyr21c6660wg1444c"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.30.0"; sha256="1iz72gbpm0msiasrc0xyiw9c3s2a59fgbz7kfrlwskspqvm9pvdl"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.30.0"; sha256="1ln4v06pf2skxaa0vcwp9m2vkczm5bc37kfczqg022n0fi7wa084"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.32.0"; sha256="0ivfq9z66v9a867v4c6581v7pmbcwy1g6fr5bgs1fp0n7rl6b15g"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.30.0"; sha256="1wf5rxxxa3qgihpa9hbcabryz74k3vc1yp2mscs4w0zdym48fw78"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.30.0"; sha256="1g543scp553gya9ax7c7rm93gra1mqhv93y8jj9hvv7sq5mx469j"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.30.0"; sha256="1hvb77c44vbhyqbpqrid5vrashqng3clpqm5svr7fq6xhqaj3v34"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.32.0"; sha256="1n265xk9rr491rlcgy98nvvxmnhjf9b4x80qbc9xlb0ks3hpgx13"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.32.0"; sha256="1nmn9dqp6kdsz7536wln8wv1ms8nlgys7xlmc555q1irc1pz4ksc"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.22.0"; sha256="1sqkvkwlvwwspj6xg3xq062s2brr6yjmhw5dlccrjff0qcc9w41p"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.22.0"; sha256="0yhalgrj0p99ka7wfcnb70adjy4n7zlk9caxd5fk8hhspzkwzkfp"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.16.1"; sha256="18n4shnlbgz6vv63hljzcpz1yd2y4p0gwgj6i37lvr4p7hmg7bi3"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.20.0"; sha256="0fxvzj5vgsdq2jm467a5ddya5p6603rzhklh8hmdn9d352yzy01i"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.40.0"; sha256="11cjlhvk04r0flf0wr7n4qmlazaaw4kd5gs589h95mblsmk4andx"; depends=[BiocManager biocViews MSnbase R_utils]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.34.0"; sha256="0mv6pqkhwiwdq72dh0m79c7inpkvz8nwy4m8b93sjy1wi76wgci6"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.34.0"; sha256="19l875n3injnn1af01jmlf62a6dgd9mn54ppcsy1x71wrcs1lk25"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.10.0"; sha256="0x1nxgdwad42k39mrfilbi1kkm9avm0cbcrhsrxs67ajng9qmci8"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.34.0"; sha256="1d7lshk5a8zn4wi4f5b8q4d206i379iv6gxxsbzygrlnk74j9kzf"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.34.0"; sha256="182pdfi6dvz4r5v41r62d0rsxkm5vlrl7y6pwx9nx3h1gaiybl8s"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.34.0"; sha256="0p2q7phn40ax94yh43xg72fmnnljfi6cfiyaad39br1hi2b6hrjf"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.16.0"; sha256="1nprhg7rkia9jwy8mqx7iqdh1qs81nk9al8fvv1ynq2cc9x77jfr"; depends=[bookdown knitr rmarkdown]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.34.0"; sha256="0jnpg8qdbd5b6809glzg68n12bavnpqaaarn2vfv5c6055qg6jgy"; depends=[]; };
SFEData = derive2 { name="SFEData"; version="1.4.0"; sha256="0wkb27cs4zvvhclgk2slx8n7jx1mx3q87kn86n4rjdcx2074ndqz"; depends=[AnnotationHub BiocFileCache ExperimentHub]; };
SNAData = derive2 { name="SNAData"; version="1.48.0"; sha256="0qd48ggg1wjy5h47hzl9iqzy13gsxxn4f7fq4b0ra35vhckmcvyf"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.38.0"; sha256="17wbf4xsljkryzjpk57kvjbiln0ig8d717j953wy0inz7vzdkpkn"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.32.0"; sha256="0p8361lmlfz496ivw9qaqkg7b3hr4gb9g9r73fxp6amy2xncb00g"; depends=[]; };
STexampleData = derive2 { name="STexampleData"; version="1.10.1"; sha256="1fr29mnczvglpkwh4vdy6klahv014ikmxwx055x4grkxvygbqm23"; depends=[ExperimentHub SpatialExperiment]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.34.0"; sha256="1k7cjakxcqq86xvx0d0799hb94hi7w05amd9yncd0nf4dcy6zm0f"; depends=[]; };
SimBenchData = derive2 { name="SimBenchData"; version="1.10.0"; sha256="1g5wff2hx3sra48wcvwh3hs9lpfavq2pqflcm9wfcch9y10m8iqd"; depends=[ExperimentHub S4Vectors]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.30.0"; sha256="1w3f71mfq74sjlsasi87gvqs2mhny41zm22zswz9km5msi8r2wva"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.14.0"; sha256="0kwff2nqv7nf7rqifyzr6klba6k1h29y4332b60k7hv3psjsm015"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.10.0"; sha256="1chlik8ycsiw0kvxikiplb5xkj4afi4qniy666csyqlksaflr703"; depends=[ExperimentHub]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.40.0"; sha256="0m92db12a9h7866l3vbvpqnxnvkbik8znh3l6qyl22l438wvd8b2"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.38.0"; sha256="140bn20n60dnsb3li0ygnymfb7wwgh523yx8pmc6zvyx6izdg618"; depends=[GenomicRanges IRanges S4Vectors]; };
SpatialDatasets = derive2 { name="SpatialDatasets"; version="1.0.0"; sha256="1szsggymx05swr4i5mgxcxk7jbz8qh6xxwpnmmzajns03gmszggy"; depends=[ExperimentHub SpatialExperiment]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.44.0"; sha256="04saqrdzl1irdbvgr9s86sgwsvnlp5l4xbx16wj41476rbzhg2aw"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.42.0"; sha256="14w4g6n0nn1mg9wifqp2jrxb0hy2sqfcnycwhvir1znfck83fzir"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.38.0"; sha256="1f09l2ihh80cqqg6sw5ypa51c1zsspkq2g06lbfi19zgllcfh80f"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.38.0"; sha256="0pz8xmi4zxp1qvpcwhf54sy5lhpaspdlad1dlrhxgjbfm8xl535q"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.26.0"; sha256="03p3ifgr9w737v9dvx1qvj2kdyf1l9a2qnmwii0nmlak9dp1cc52"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.22.0"; sha256="04fmnqa95rb2lgflcg3d7kbz9jj990r9hlxwlhhzb79dv9wd1mfa"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.22.0"; sha256="0vwd0pi8g4pmz8g61c0mr0njha6qsm5m1z7iyf0lnwrm6y6bv6px"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.22.0"; sha256="0qrcj2mb58dwdwfpypnwyb2f7kcjjyqnyz4v42rc43r04xy14l2m"; depends=[Biobase]; };
TENxBUSData = derive2 { name="TENxBUSData"; version="1.16.0"; sha256="071qbq0avzbs6c64l6lrmrs1hmbrg98bnf91vpz4x7s0p5axx87n"; depends=[AnnotationHub BiocGenerics ExperimentHub]; };
TENxBrainData = derive2 { name="TENxBrainData"; version="1.22.0"; sha256="1ia7a6jq7giy130avgv5brffxk5r2yql7rjppxs9nab3a6y472yy"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.20.0"; sha256="09pgf31x1zqcrnvf2fwdbx4qn7pgsaby8damxcfq5xr3iksqhdwb"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.10.0"; sha256="0yi7axdam9b0ps0818cgygbmjcdknn032bm2snb6xf3g4i8n45f4"; depends=[ExperimentHub SpatialExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.12.0"; sha256="0vi99vpbfzwwqpdxgjlhcr835nnbfngwz6fag9kvd7ndicb21zy4"; depends=[BiocFileCache Matrix SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.20.0"; sha256="1p0pyvgwzbnkx1687n2j7gxjzb5s49r1njklsff0di66m8nlis7k"; depends=[ExperimentHub]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.8.0"; sha256="0f6gj56rgcv378ry4h1sgm3zhv083yh23qf1pj9rvabwhdfgk8p1"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.38.0"; sha256="19s1jxrh04gfkx7a9h59v6vl063wlf2j71bi6lxq9lm689y23z4k"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.40.0"; sha256="12z820mwi779dlmg5hf1cq5gpvrxg9ijb38s43fbzzgagn25czff"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.32.0"; sha256="18jl2x9ywfwm4ir2kwa9y4fq0lsz0295lx7f7qz08l4d1yrb1w4v"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
TumourMethData = derive2 { name="TumourMethData"; version="1.0.0"; sha256="100kw4552rc48sqpw9makyf9nwgrs049hkvbrd8zjmrf542cj9md"; depends=[ExperimentHub GenomicRanges HDF5Array R_utils rhdf5 SummarizedExperiment]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.26.0"; sha256="0jj8wp2mp0xgd4hixyb59bykxbbpklncjj39ra5nyw4h4ziwrbfm"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.6.0"; sha256="0zr94qgyj365sy7cyzjsm9zbxyv6zbd8lwfr1nqz0p6f6hb9b8qw"; depends=[ExperimentHub SpatialExperiment]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.34.0"; sha256="1p8z4p1s5l4hlp78ifiy3gan1n8iljaafbqv88vxwbjh2x9gfnjl"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.14.0"; sha256="0yv323mkv681f20dzjh1xaz19xbn4j777xxlmq27rvmk3j1vfah9"; depends=[GenomicRanges]; };
WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.4.1"; sha256="00ws47shsfnwi6c3ah56bm6dvicfhfr50jadll613fddv7cxkfsw"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.40.0"; sha256="1qzbsmqn9y1483108pzh8zkiw1q1xzghincrcmz8cl2a4q10hyxf"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.18.0"; sha256="16c79wy55p4ryglxph80dibfm1ni8c5yfk6fnmq064ihw4zwcld5"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.40.0"; sha256="183wgbc4j7f9d4rwr9smndnmw1i390abak23wp6p02zk340qmvq4"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.50.0"; sha256="1p9gqv8xnakwhf4sani09krlrq6qs4gr8yfjmi8g3s1zq4d32h1k"; depends=[affy]; };
airway = derive2 { name="airway"; version="1.22.0"; sha256="1xs5bw6azvcdwh9325alndzrp82alxxqwpkf60zsk2q7lv43nwbr"; depends=[SummarizedExperiment]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.38.0"; sha256="0nbg37w6ij9vpj0mrbsx35naqv48kg8kkfl3x39ycbl860mrbr0b"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.28.0"; sha256="16gy79hgy07kynjf2s1lrh6a86brhz1caylginmkw547hal43nvf"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.38.0"; sha256="1q9ig5z03flq57nrhwnk6gdz4kamjmpwdfifwvnhac3l3f5z828h"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.40.0"; sha256="1mb821p4hf9fmj0f7s0rxwbxv8kb5ln0x2gfnydg4jnyz7k9w5p8"; depends=[beadarray Biobase]; };
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.16.0"; sha256="1p441c08bxx81z556n5wrzxkbq5g4lrwkp1wk7jh6zk6qs3jqg96"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.40.0"; sha256="1q77pmvjnwyi0hm0dmi45a5fcj1phhz9r2fvz4vnmq5b632zp30v"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.26.0"; sha256="06lnkwqzsk4v241309w174ia6x8iksh7rvk3z8l0xr6hf31sg5gw"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.16.0"; sha256="1wqdj1499psnf9y816k05m6h38yfsin4rwzqm1209ddxza6jbw1x"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.40.0"; sha256="19dgvdbxsswy1fl68wwf4ifplppm1blzjw1dr06mz0yjq80a7rvl"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.22.0"; sha256="14rlw5xxgbybsrzmzncqwzkc617gfays5z8x6ifigfdlrp5h1rpl"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.18.0"; sha256="1sfq6vxkb68l0q5qbnpm3fi53k4q9a890bv2ff9c6clhc42wx3h6"; depends=[ExperimentHub SummarizedExperiment]; };
breakpointRdata = derive2 { name="breakpointRdata"; version="1.20.0"; sha256="13w9vp436akpnywhsr6kz763c2yakrvpyiplggfb6w50wi2xm5xj"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.40.0"; sha256="1nbvacb04ka0p88hailawz0i4472gaagxy0yw9qg83f9da1dzm4l"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.40.0"; sha256="0q3lvq447jw3ny2896mz009x0ijdxgy4xgk4y00sv9nsbwic1ais"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.40.0"; sha256="03q9y9cbipp8a275hcw5yzwx7l5qrc6fqzdy8vy7z5ij825ygnad"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.40.0"; sha256="0p11hll0pjzycgqbjhcn06vcah7kfvxbzsrqvbwglajs0b5m6dra"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.40.0"; sha256="0mi9dqbx7fyrxmc4l12c0x6i865f5691f94wzw88q2hwzzz80n6p"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.40.0"; sha256="12r8zql30ssr0cxy8v1qawwsky54321c737ny19n2yrl7sm08gf0"; depends=[]; };
brgedata = derive2 { name="brgedata"; version="1.24.0"; sha256="0nplh5km45hdb001mc86fh9yyj56mfvcr2g0zffq0nbjlpvspz0i"; depends=[Biobase SummarizedExperiment]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.40.0"; sha256="110791bhnpzadc2ja8i59bix42ficqxqw3il8hnqb38i7c43w0zw"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.40.0"; sha256="15fyv6l6bsa4fk4qxpfgxgw5aq1dd3pry84zapklijxm24g6yl6j"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.38.0"; sha256="1d2yv9gq3w1b50f602ajbdqky5vwsh19qqg8a3czlphghrjrlfwd"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.40.0"; sha256="1670df52ainxq220vzblrv2jml2bql8vid09b51dzhjhikwzxhs4"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.40.0"; sha256="1rqblyk7389xqwzvib2xjyjrc8l3qd2g8z9vj96mrfyr8dpccjjs"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.28.0"; sha256="1vskwqb0n3qfgmakc8zlvfkag653gkz3l9j8lqnhxbbnnads738j"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.20.0"; sha256="11vx5hmbjsfzyxgb8qzhy3f54krcp33h8ki61irxxl06q2n59928"; depends=[]; };
celldex = derive2 { name="celldex"; version="1.12.0"; sha256="1ckjdmiw9g1wdswijy3dvamv3kqi11j8b8p9dgr1yv5q2lfjbnwl"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; };
cfToolsData = derive2 { name="cfToolsData"; version="1.0.0"; sha256="0icr4llq99ghyvi8nsdfnp5sydh8icr23y8ar7jg0qpwiagdl3l9"; depends=[ExperimentHub]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.26.0"; sha256="0hfisbzbhz501dvcwvx3cnag9643ydw6f0q122w7mrnzsag82013"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.18.0"; sha256="114645f6db8pp263g6h2gb2cwhdgqh8risssq2vfzzdv16qqw640"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.28.0"; sha256="13xrdr9xrfysh714q4p00pgvwr6ryhvd3jinfqr1gb27s7bdvsi6"; depends=[]; };
clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.12.0"; sha256="004g6s917ayxiixlc8zp4h7zai9amcm6bllr9mz5j9sgm8kd8px4"; depends=[ExperimentHub]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.38.0"; sha256="1aask6cx972qw62p2p16n1sk0rjmrr9hhqlaaab52rn4lfdiaba2"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.44.0"; sha256="0qkjmbyh5hwfjw657qam7xpjnym4qqbv1292fbqzwdyr0019jpfn"; depends=[Biobase]; };
crisprScoreData = derive2 { name="crisprScoreData"; version="1.6.0"; sha256="0rrwsfp8m8z389yfr8ls6wkz7faa2iz8pnljl2776qa3zgsfmhni"; depends=[AnnotationHub ExperimentHub]; };
curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.14.0"; sha256="06dcb58i86gg4ar3hyh5w8kdqd0rf1ps7l021nfwklzm622b4wzc"; depends=[]; };
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.18.0"; sha256="16g8k2cvi890b9j30yzm7lxnxljl2k4x1yxvd8cg1ba94vzimw6k"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.18.0"; sha256="1dy58ppw1ck89p036y6iml9210hv7f4zvsm0wi5m13b4ij7a749p"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.38.0"; sha256="1i9hbm8gh9f09fzyjga7rjps7hlbsivnnbpk8fgb0838msjq5bl2"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.30.0"; sha256="127kjiqb2laz77cx9lr0rs43kgwxyi52rd7ivhfpcxhivsg4hcsr"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.34.0"; sha256="1dqcdpzls41adih54wfpcb36mpysw0za14pz4wsjwisqnjwzpxvn"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.10.0"; sha256="0fgvpxc1878lm8l0bib12zzwrgsap0vw4zn77qpz1mljnz43shcb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.40.1"; sha256="18163l0g3g042m2qgz143smxia3lp8v7rddkqmkg4hzns7baxfaa"; depends=[Biobase BiocGenerics]; };
curatedTBData = derive2 { name="curatedTBData"; version="1.8.0"; sha256="116ck61pw6diili326x0x8p7f8d5w624n4w3pd212vhq8555yrqs"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.24.1"; sha256="0hr66p8l54nzfsizcxxd2njy44xnia607wvfhrgv46f3f8s95z02"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.42.0"; sha256="1xfkyncwi9zrynk6dqsmacmkxx2qvj1axda3wn55b1vbw2wimpyf"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.16.0"; sha256="1vb3f5ar2jlkjyhp7rv4imlylinm6fi94ki277jgdaxn12v78qxj"; depends=[AnnotationHub dplyr ExperimentHub]; };
derfinderData = derive2 { name="derfinderData"; version="2.20.0"; sha256="1h8rl8mnxk2lsl8xa8mihvbd77yw32fpxdbhhn4rv1v8i5j35r7l"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.30.0"; sha256="1f0gnwpjxkby7kd2bphnz4lv7gx9k297yqz0b954m7adp1sh6aqa"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.34.0"; sha256="01r356zdy4pi8z90pbww8q7dfmq09zf148d5sq3w22z1ypsy6zm1"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.14.1"; sha256="0bjmnqly57y69axnz5q2rqz7j7dnz1xzbhbzcalv99kybjiyqyb5"; depends=[bcellViper decoupleR dplyr magrittr]; };
dressCheck = derive2 { name="dressCheck"; version="0.40.0"; sha256="1mb6cmyf61rb7jdwczhzcvadgqijij53w03d87xq7zqsc7jxi9z3"; depends=[Biobase]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.42.0"; sha256="06sp4fxsph3w84g960s65sy1vc032p2xj3sf0v94nh78f6myg0mj"; depends=[GEOquery marray]; };
easierData = derive2 { name="easierData"; version="1.8.0"; sha256="138x8i1zd4cvlawg9pa5ia1kmmdaxm0g9lkivzxl077s9vlpjp8d"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.42.0"; sha256="02v2hv8qcwdi2z531xqvnfdymzmd5qqp868arg5r0zcrzj5kkiaw"; depends=[affy ecolicdf]; };
emtdata = derive2 { name="emtdata"; version="1.10.0"; sha256="0fjqmg9w7c1lv0b0ldr26rxsly78sw2asj3hw8h8yd623g7bkddw"; depends=[edgeR ExperimentHub SummarizedExperiment]; };
epimutacionsData = derive2 { name="epimutacionsData"; version="1.6.0"; sha256="1gbh1ad0kqdmyrnmvrw5lbxlafvq12gqmbw9w3bxi7q1ahclh4yh"; depends=[]; };
estrogen = derive2 { name="estrogen"; version="1.48.0"; sha256="0nbyg1pj7vqxaxgznkhz2v14cq42gg8jkn5mbkd3nrz86slzkblm"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.30.0"; sha256="1amhmhl74fyfvh4w1a0r0g7ahqm5yq16i87s4mzwvc03vslps143"; depends=[Biobase metagenomeSeq]; };
ewceData = derive2 { name="ewceData"; version="1.10.0"; sha256="1kgh5r0pplvblrrkf1qxg7c92psrwm2bjpbs30dp8mdsnjdahm9v"; depends=[ExperimentHub]; };
faahKO = derive2 { name="faahKO"; version="1.42.0"; sha256="0m3m9382b463wbl5hrzh04lp8h052gka8b7q69s740hlb91npjx7"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.40.0"; sha256="0alh11k7vj6ripj2017j6afa8wjb4xb03zfvrh10svsrr0a7qldv"; depends=[Biobase]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.40.0"; sha256="16bxp2x0n77hzlf6m871wgprrhkydcbbnw88jp8nb7d0fl1vhxyr"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.44.0"; sha256="17dzp6gjfgsnvwplk3inf7s491brf1pnn1bq1a195s8m0r5kd946"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="1.22.0"; sha256="0y07zj5iw6fmr397xkxijgfy8mmv1k42mqjfpmv01kb0hzayjj8n"; depends=[SummarizedExperiment]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.28.0"; sha256="1r3w88d20jipmj7gchv0mmw9rbziq0s7vyvi5isc4lp59hc6m9h1"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.14.0"; sha256="0wm0s1839c14b2y05b8nini2aqp39vl7ycsp1nz1y2amxirdfpyq"; depends=[]; };
fourDNData = derive2 { name="fourDNData"; version="1.2.0"; sha256="06dzm57f56y396py2mmfzls9yypkxzj032hpba8srq263zqpi9z0"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.38.0"; sha256="0sdh0ijkpni4xk07dyvkckr6k0dha6zbciggxaki61j99fs5nwsv"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.30.0"; sha256="0vvr9x50yw7h5qcgcva2505cgqk276ci7yfbzvizn3mq4n2r3n3j"; depends=[abind dplyr EBImage locfit tiff]; };
gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.2.0"; sha256="13v14dhwb1mkpxc5z08amqajhkncrkl38k4js48bp36s8lzb0zw8"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; };
gDRtestData = derive2 { name="gDRtestData"; version="1.0.0"; sha256="0pwrypvc1hvrcd6dckiid5vjpwpcbw3vg61s88mms3kjs8163c0r"; depends=[checkmate]; };
gageData = derive2 { name="gageData"; version="2.40.0"; sha256="13g8hzkh34c0my75xnxdffa1d67xvn9hn592s25m18400lgsfif0"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.40.0"; sha256="08dgm24ycsldp6pjqhflpxqm91yqp199n2j1fg9m4wrgbyakypkm"; depends=[Biobase]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.40.0"; sha256="1yfmp96k1iy6sjyafs2sflflnmnq4czkjba61vzxb4alirra9jf5"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.38.0"; sha256="0skycixz0qbm8cs10kgrkl1ab1qh0mz8641mf5194y839m81d060"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.34.0"; sha256="044q01dbcd34lxgwpg76yk0msvx7gpiibiqxp6fr9jswq6izrzq7"; depends=[]; };
golubEsets = derive2 { name="golubEsets"; version="1.44.0"; sha256="1rwhb48wz20i06whxdj1cb6qjda545w4050y87c55h3xqcair3ya"; depends=[Biobase]; };
gpaExample = derive2 { name="gpaExample"; version="1.14.0"; sha256="0danfxw9jqlv9862pcf7sdaxnwxrpgs9gy38xpjzx3q25y4y1589"; depends=[]; };
grndata = derive2 { name="grndata"; version="1.34.0"; sha256="17g2jp99dl6kypzz4v2pf0h29vx16pwfw6apbhgggv1had9593nm"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="2.22.0"; sha256="0pflrqg6yaiw7w9b8wazf74sdgx1fqgd0iz9cdq0bx4jnra5f0gz"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.44.0"; sha256="1qzvf4g8rd85g3qxx5gckx4w1v258h9jd9dfcxbn39ghamqhy9yb"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.44.0"; sha256="0743byawrk3azgrb1wdb16khd2pl887fxf4r7mf6zm08lgjyr3vv"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.44.0"; sha256="1kla7h8hv6kyc9v6ra5scg3f1dlmw160wl5c1vqq9b6irqmrah6l"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.44.0"; sha256="0g13vk2gnnmpm21fngr7cfhry3sacxmbxsym5wz4sibfv3d72n7r"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.44.0"; sha256="1486k3dlnvadxl8qphzria3qrw91x8j0b3k4di8c8s0fjkrfdh33"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.44.0"; sha256="1dx59dsm4pmca9xf5c2abk5clmczx2wh6j47xx8h064x3n5s611n"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.40.0"; sha256="0xb553h6ffnik8c299h5imaabb2ca0fkqk0hrbs1a1acg11xqs32"; depends=[Biobase Biostrings IRanges]; };
healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.6.0"; sha256="127p0wwqf0dx9c8y3rjmsw6nl9rczr72zn8dsqf92mdj13qpxi2m"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.40.0"; sha256="1w96g3m8kniz4nil682hz55pxhxgaqfgmfii990mrd0smirnckwx"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.40.0"; sha256="1v8ssmzad3a1wwwh2rw9pkrcwjbbv9m2i5iqjsn0qmi7s9xpdn2z"; depends=[]; };
hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.22.0"; sha256="08d6p5zmf674hj6qy6sz8n9fg70xr83y21d7ln22i9gzvvgbazpi"; depends=[Biobase]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.40.0"; sha256="1c3432d28n4bj363s7h493izz865i2gfrs8x2fr6n2js9p4bz8bf"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.42.0"; sha256="1xxwj4d760y6ymw2ag5xqd212yb7wns2yaxgla62v3pcalvdccfp"; depends=[]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.42.0"; sha256="0bywcagkg17gdcwbbw68fla1481llz96bhr3apbymvk8m4vbhlp0"; depends=[Biobase hgu133plus2_db]; };
imcdatasets = derive2 { name="imcdatasets"; version="1.10.0"; sha256="0yvii8qxgxabf9i2z5pz37dn9s6vw3g6z2k6c5k4rjns8wmvixps"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; };
kidpack = derive2 { name="kidpack"; version="1.44.0"; sha256="15c7ahrpjapqp90nanpkjb9hbcv42a84xg939fgpzkpgc7ch0m9k"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.38.0"; sha256="0j7q5slcb59z6vf2z123h9ld0gaazsiih7an603id1bqjprkd74b"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.38.0"; sha256="1srwn3sy929hskka9gfnqpjrh8xy0pz76ihq4amq8wbdawh1zv8b"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.42.0"; sha256="1c27s7ajkmygfmd2g6dpsamwcm87xlxgr31wyn6g1rb7zw2zdpy2"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.40.0"; sha256="1kzf8lsl9sh0ikn9zx5sfj5z7ld94xldhmj7awvgp0bsbqlra2qc"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.28.0"; sha256="0gwaiq16q1kfx533hymqnh6zk9nimljdbidvzb23bykj99kmsiqr"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.34.0"; sha256="0vhysi7wyw7d3vbq4qcq3i3ic953awppg2bix40ywz1459b5p43g"; depends=[]; };
mCSEAdata = derive2 { name="mCSEAdata"; version="1.22.0"; sha256="0la86384k9f0r8mgh6an023bx1sjklglgm9rwzg33hcc58lb02ki"; depends=[GenomicRanges]; };
macrophage = derive2 { name="macrophage"; version="1.18.0"; sha256="10d69v34fhxfy4nhw8h50j4q5kblm032cmjnparxm5gm7ksiqwxy"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.38.0"; sha256="0bm1lfdjhav34rqvkvygkllmwibjh0f34p58vml3ljjdhgghawrq"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.46.0"; sha256="0ihwmzndj3yxs75x3h9w03ydvy08hmi0pzy561mjsyhdrrb8i4dc"; depends=[]; };
marinerData = derive2 { name="marinerData"; version="1.2.0"; sha256="00m1r6ijhykq96d86h17asngdm8a1ss2213nd6n6lsj4dshr74a0"; depends=[ExperimentHub]; };
mcsurvdata = derive2 { name="mcsurvdata"; version="1.20.0"; sha256="06k500vivc8anxv1x639acjv55w5r6pc2ghmszkh42h1q7a27r68"; depends=[AnnotationHub Biobase ExperimentHub]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.38.0"; sha256="18gixjk80zzvjg39av6rhbl9zpvnx09fd6gcbnsjxag7vmk88d1d"; depends=[]; };
methylclockData = derive2 { name="methylclockData"; version="1.10.0"; sha256="0q4hiclws0fg03kwvbdwka024gghl1hbmmfficxfghslll78mc3y"; depends=[ExperimentHub ExperimentHubData]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.40.0"; sha256="0qlazpmar9wi0gbh2qpkz8f44vzzg79iia1sgry42xbykx7bzx0y"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.32.0"; sha256="15w8vldxp5wp0vqfy3k7s8imjvmdaibgiw0p2li5sx2j0g6i27g6"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.24.0"; sha256="09b0260qxdhx7sax1xmg8nz8mf0nv4yh70ibd8cyxj8fpnzifnhh"; depends=[SummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.10.0"; sha256="1i118r0wfq2y57h3m1l3nzhrixmkq0dsc1dfkbfi83xl29ijhjn9"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.48.0"; sha256="12lhyv3zb8vps7v61zfm8sz4r18rpgphgy7nvdpj48dj3awdnpw8"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.28.0"; sha256="1m2wl7x48rjjl3sh8r42wmw761r55821jjvbxjs7lycbmgd162ph"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.32.0"; sha256="1pkg77i5xi96yqn7i3xchwknh5lii35hyms8rjqqzamjr7g16ifs"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.40.0"; sha256="02x97k7s5l3ca1xws4xplmc3x14wjy0rx1kl5jmy59ncc2lwik4r"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.40.0"; sha256="1l2blxqsxy27lkrgd08r6a3j8va54hzhl5lx0i9bxpj1i9xiwkr6"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.30.0"; sha256="1gf28bcj65vyvghdd2vqj3zsymw2y4jk8dhhkhh6ps18qh149ca0"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="1.22.0"; sha256="0s7bbcxgly2xr21dkf88hpby5b4lhwy18jyji88dhqqq4jpbc8dk"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.42.0"; sha256="1jm1zjqzkd0vy8ww0k0y1fgs6i9vkg7ir6dyga001n170g11vfzr"; depends=[]; };
msigdb = derive2 { name="msigdb"; version="1.10.0"; sha256="1fzgq31n059zhlkny3rfwfnriz81q9brk14r5yx2zhizlv8jcais"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; };
msqc1 = derive2 { name="msqc1"; version="1.30.0"; sha256="1s6wfmrss67qz8lsiqbm3bsvw3zm9pczv0w6712dd2bd2mf2lirg"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.32.0"; sha256="1z4n5bykfk02b6gscwygy4r99fjk9cmiv8fzp2996q4mhzr7dh6c"; depends=[]; };
muscData = derive2 { name="muscData"; version="1.16.0"; sha256="01jmd59zk4fkny984wv9iwd9bq56cq4mnqz1x9wcjkmgk5bnvwxa"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.38.0"; sha256="17rbb19wv8dzgkrkhgabm3fgr3l2gzvjl34ichlcfalaa17wci3w"; depends=[affy Biobase lumi]; };
nanotubes = derive2 { name="nanotubes"; version="1.18.0"; sha256="0ah7y051mk6pl96y6h9qlxk4gg2a7al8j9ccwk0fjl7v5fa1daya"; depends=[]; };
nullrangesData = derive2 { name="nullrangesData"; version="1.8.0"; sha256="0dd9d07z2k3n34wi5mynyghc0bsmyn5fhl0510ij7zbd58i520xy"; depends=[ExperimentHub GenomicRanges InteractionSet]; };
oct4 = derive2 { name="oct4"; version="1.18.0"; sha256="1kbv532sav3a0s1893hxjw7pf25lhff5kxnraq6h7h7vqqmim93j"; depends=[]; };
octad_db = derive2 { name="octad.db"; version="1.4.0"; sha256="03dih6cc71aj31l9s982qpdsyy51q83inykyz4a8pk81x3pld2n9"; depends=[ExperimentHub]; };
optimalFlowData = derive2 { name="optimalFlowData"; version="1.14.0"; sha256="0agaavlhsv1zk3xdwncn4nkz7q80bjnsg32msnnj8x79925hfgwq"; depends=[]; };
orthosData = derive2 { name="orthosData"; version="1.0.0"; sha256="0n9vkvfxah29cjfwnxjqw0kf5kdgjvx9394kgilnbskys95fh6v3"; depends=[AnnotationHub BiocFileCache ExperimentHub HDF5Array stringr SummarizedExperiment]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.40.0"; sha256="0zjys778k9xydd6r1nvklz324mq688472b8i8d1nm8ayb880bi7i"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.40.0"; sha256="0lv7wlbdi05a3l4pv8x4cnc6jzqk1gb82rpmj1cv0nsq7gqhqscv"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.30.0"; sha256="0dga4bb7qjigy1m1yp4bs4frwynjqfy3dnnylx4maai9x2zlynd0"; depends=[DEXSeq]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.40.0"; sha256="1lr7dn9s7i287k602xa1zyx5xs6wa3g58kmpamc3hcsi5nn1iv7x"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.24.0"; sha256="0mhqgii84ncx2na49h3qvciqz7jfbbgil12i2cb4snlmxpa66k0j"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.40.0"; sha256="03yvz9z4dmnm4cvfwkw3b7srmq7hmwk9y21lpsn5yz01wjp9wf6w"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.22.0"; sha256="0ks5lxfwwgxfv0ls42fr5hj0iq2m6ylv13ybp8gq5r24p6hyigq3"; depends=[GenomicRanges]; };
plotgardenerData = derive2 { name="plotgardenerData"; version="1.8.0"; sha256="1c8004k5kqx1lryc7x57xvlqic7km11r2b723r5ar1x5mghl9lr3"; depends=[]; };
prebsdata = derive2 { name="prebsdata"; version="1.38.0"; sha256="1jszgh5sq0fls0484zfy41cpxwfg04pky54ma2r8v0x2aksb9fnv"; depends=[]; };
preciseTADhub = derive2 { name="preciseTADhub"; version="1.10.0"; sha256="006kdb7rv63jyn4xnvrk13s5by1m85jgnfs2594h51af4sgyd2id"; depends=[ExperimentHub]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.30.0"; sha256="1962yhm8j1mb3yvdkvdn8i35dmwj69larlp201vwqr8a25l67isq"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.30.0"; sha256="0mvlnfps3xa6039ysbp5hc8cy30masw9p1rhhms9f79m1xh3ldqr"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.30.0"; sha256="19dkx1brrwjcrjyfhajiazfpy853kmqr10npzkarnb1fw3dhn9a9"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.30.0"; sha256="0mccc3fwrnayjlpjyncizsrnnapgb7mhywvcdwlspp2ma0xzq2kw"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.30.0"; sha256="10irpxg5gfj10s310irjh1lacg05s6073vfqlv5jmpwgjjz8g84m"; depends=[Biobase]; };
ptairData = derive2 { name="ptairData"; version="1.10.0"; sha256="11fxa0j4jl19ig21v00acbkapwi0y5d9n36q82pb8kz2krdaa9xc"; depends=[rhdf5 signal]; };
pumadata = derive2 { name="pumadata"; version="2.38.0"; sha256="0rc2qda3s3326g1ymychhxa3c1vb16vj7sllfqymridqwm907k0x"; depends=[Biobase oligo puma]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.20.0"; sha256="0l6agwhqsm5z98j0hm1h7df6lrq7rgwch99a33532f5zmn6bq7xa"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.22.0"; sha256="18k925rd7yslvc6gl9gn9fk7672w57327rsybi5vpphvpyqsqls1"; depends=[rRDP]; };
raerdata = derive2 { name="raerdata"; version="1.0.0"; sha256="0f8k9a714fc0wkrg2ja1193302q712aw6q4nv79qnvavqx12p0hi"; depends=[BiocGenerics ExperimentHub Rsamtools rtracklayer SingleCellExperiment]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.24.0"; sha256="0fmidhiqaf2vrhz6b5qr7bhisqnr3vff1aczp02qfhj5zyrf2vp6"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.24.0"; sha256="1ydi54mbvvsn73j955qjiqgpc2qvgdxfa9gsflx5cc14c0aqyb9h"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.40.0"; sha256="0qaxxhn31kwny0327ki5yllp4cnljdqbqmrb0arx1qggbysb31gf"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.26.0"; sha256="0ir21cvcqq9xh43pidh4lrm1slzknsjm9lad3qhh7dn2x5dg8p7p"; depends=[SummarizedExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.8.0"; sha256="1qjacprh3q0g1fyq70akasfr66hxw2g8n1bwn4yhf798vly5ngf8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; };
scMultiome = derive2 { name="scMultiome"; version="1.2.0"; sha256="0j9cwlnj0078yyzfjiwsadx34g1ddcrfm5xmzjv59dmk55iy59d7"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.16.0"; sha256="0dbh3sqq7lkkdf7vls5qg7fbn6y74c7hsigb4d69pvk934ll88aw"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.14.0"; sha256="1y28wldw2xln9bp4hgymjdlgz9fjiyhb56kac6z7aiy1pifavw48"; depends=[]; };
scanMiRData = derive2 { name="scanMiRData"; version="1.8.0"; sha256="116v4l8rqg2lsadjhhhn40fdgfar6hbx5abri5kdq7bc5fagg957"; depends=[scanMiR]; };
scpdata = derive2 { name="scpdata"; version="1.10.0"; sha256="0zwwbqss2a6vkzhz517j89gf02z4f5b9kx5wbnyi2g15ihwlvaxr"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.34.0"; sha256="0iaz4i5garvhai2bpwxm59h4qasbasv66a2b8mql2rqa4s6wnf0a"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.38.0"; sha256="0kzmn5hx8ag02pz8b78cq7dbalw2w60y441cjyyvxjgycwcfvmvj"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.36.0"; sha256="0zxmh69v45ys1hv9kkr7g6v67npcip6s11r3am502zq1dnk7khg1"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.38.0"; sha256="0c6zg119rdmqhgrzi3s10856l9vyrqmd8c858hw20aiagvxn5nik"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.20.0"; sha256="0a5xchdnlw9ixafk8p3ny58yqv74ba9j4z2sdyp990rbaqrx1gjw"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.38.2"; sha256="1zpks4fpwjb640pggwd1xldri2lf3fl8pcbvi244c6dgkf8nq93i"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.22.0"; sha256="1i6ffgi79jgpkg6nhil7v7vi23yv2j7czzibj6dxdc0kpb1n0q1h"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.16.0"; sha256="1xn0y7mcpk4s4x9azzabxfq0hxwlx7dvpb4yjrl3x8zcyk394s3z"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.38.0"; sha256="1683dsi6bm45v5wk9fgvrmvap15w6gvwnfijg5ayj29shiaa2qif"; depends=[]; };
smokingMouse = derive2 { name="smokingMouse"; version="1.0.0"; sha256="0xm4a7yp6802xcmh29hwvlz39gqb5s380mzi5rck89fl6wjl4bf6"; depends=[]; };
spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.8.0"; sha256="110anvdbsq8mh3ibfhps9hyfhlk2np4mjs224377s1sasmpzwbbb"; depends=[ExperimentHub SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.14.1"; sha256="0zqbnj55d06xai9qlg1hcy2kczjn6zxrhqwwsi18a36511qks5qb"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.14.0"; sha256="0kvnkz71w1c7yhl4kqdj9j51d1ix2g7q3pqr2678f31hhw7yr1ck"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.38.0"; sha256="1ak78mvgm9dv80ji44b1cb4y8bq0l4k0cpx734m8dy8mr3i8nblw"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.42.0"; sha256="0pcvvvaqalr5jklqy7vzxkp0cd9nj9dk941drgr7ndbqc2navz2c"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.40.0"; sha256="1hl3r6smv25vhwxwrxw2c98db4c36392js49zj9kgf7c22qpyaqr"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.6.0"; sha256="004sjgvhn9hq14f4mwfakrkkm2mwr2bdcbld25b393in0k26r9hf"; depends=[BiocGenerics Biostrings jsonlite remotes]; };
tartare = derive2 { name="tartare"; version="1.16.0"; sha256="1w8z756s2c4vcxan8lid5mflyn8n718vhqn72x3mspg1pbb6k0l6"; depends=[AnnotationHub ExperimentHub]; };
timecoursedata = derive2 { name="timecoursedata"; version="1.12.0"; sha256="10i4wcdjqd2qh6rpl65xi5mj2hsam78hi3haqp4xhg0ha4f73nb3"; depends=[SummarizedExperiment]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.40.0"; sha256="12db5w6fsmpjx2xgq7f3hp5czm21jp17826mi7jdz1c0217i1h4s"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.40.0"; sha256="1s119zkz03rq0bs3fjx85rwr7f2fxk144ykvglbzz3m6wxwi94r9"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.22.0"; sha256="17hjzwvk9pa1zhvmqrs99dnm428bm2br4xjmydp7d8j2mdsbkfs3"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.30.0"; sha256="18fn2krbc1mg3phx1sjpshsq9n39jlm75n9s7615h4jdcky9gzld"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.24.0"; sha256="01wxdwq87yan5a71z60bzs18w1ryjvgscnrrpdksqs56009k5992"; depends=[topdownr]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.8.0"; sha256="15jmhn7lrdwz19hv076yf0g2wqw7c32vp4pjzj2151f4xzxrl1iz"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.40.0"; sha256="1s071578qldq564ylrkd9azn5519rdc3g1gdp9v8hj4zh8kza56v"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.30.0"; sha256="0ksmg3gblkqzz40pzm35y6wghjmszrimdx7bxhq5jv4piqwii0hg"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.24.0"; sha256="18wbxwwp7bsmdbn4g6d96x45b672fyrhlh38kbcz3j5dysdg1clr"; depends=[]; };
xcoredata = derive2 { name="xcoredata"; version="1.6.0"; sha256="1chcjylfdl07q19f924hsml22lbfcjrzndp1appi3q80hzbc3pz6"; depends=[ExperimentHub]; };
yeastCC = derive2 { name="yeastCC"; version="1.42.0"; sha256="1abl3jlwznzdmfpsqy0bfvrn6xx99yc8wz70s228lalvac4lqrfn"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.48.0"; sha256="13hxrcsvxwjdr649xzl07fkl0mzx6j36hkmgmj9zj270gsvlchns"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.40.0"; sha256="0i3fawlbxb6xc9wilxlc5gjr22ikp1x4rc2dich1cmpbjqd2zg1c"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.38.0"; sha256="1d1y7xpggizgiv2qma31mlzri2jidir425q08fdnnm9ymcxx83z0"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.40.0"; sha256="1b7bdbyzh6lx4qp4md9b7qxd433l8wpswfq0azxjdn33yryv8spm"; depends=[]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.22.0"; sha256="0fhsg1j40rkzxphnq7gl98zyqijacmfrjf4ffmbvr70mxw3zysgz"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.46.0"; sha256="1yl8b8q8i19kx4viwinhyq9xn9d4axlfgjvm7cpf7pys4krhnrha"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.44.0"; sha256="0pmdw42wrmhqm3754s3kkz7wjih63h21zlrwl1b7lkli79vbzkpd"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.40.0"; sha256="02y44d0dappc3srl2d7lgipm6a62gvd8vivzaq4594dnmy8rvkw3"; depends=[]; };
ASICSdata = derive2 { name="ASICSdata"; version="1.24.0"; sha256="03wlk2x9bz5xjhnfgxl5zdagnwm60f23bz1qhlgqfs94zfay0jrq"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.40.0"; sha256="0l55wr09j2p8dkzx8cas2whf404anf477h2bmpv267mglrs1sp32"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.38.0"; sha256="04cxyjk1dhal8iapfilzck8kxpw8jvswxxb7fhnbxqghwlhjg617"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.42.0"; sha256="047yza31rrdmzjbg6chqrz61fh7j1a013fww5nj1nwp60rd6iln1"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.42.0"; sha256="1ijprvhbhq68v2g8z9yqwwqw2lz4f4a2pa7lnq2vhf54p9s96sn1"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.42.0"; sha256="11n5mx1m21j6cc4qrwzrxj3749zc42b1ivwnp47cf55h6j2c3rgm"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.44.0"; sha256="0j5alica5z8fzcwiva3dg1wmncwwkchb7avwvhszk7p7ym0s983q"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.32.0"; sha256="1qysi874hsa4a7xz0na0cxv0sx02d3b74h77s30mfww1wsg8jy69"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.34.0"; sha256="0bm2f7pnxibgcsi5kghjzmin01sirprym5i94qsiga7c6dknqgmn"; depends=[]; };
AssessORFData = derive2 { name="AssessORFData"; version="1.21.0"; sha256="10rbwdcjqfhq9ramrzfxd3bl2q2nqminsj3pigid6fmvyg0ykfhk"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.42.0"; sha256="1s62vqvl3zxf97syp5lymacah594m8szk23skl4bk88jkzkkx6a5"; depends=[beadarray GEOquery limma]; };
BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.12.0"; sha256="1pjnamvgx9w3g40j82rbdysbarx11gm8k6lb3vhkgb2nxv1vij84"; depends=[ExperimentHub minfi]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.12.0"; sha256="1cs6c80h34xbzpsgrpy5aj1f0nlxmy713jj1q5g156z5kiz3mzwc"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; };
BioPlex = derive2 { name="BioPlex"; version="1.10.0"; sha256="1bkakf7yi1lhwc48pmwifk7qdnc9hzaqnlcni7sy0ypwgb1mfsh7"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.24.0"; sha256="16c6nirflpj0zf2wrj0hb5xcq2168si95np3sm76r3kvwlr48zm7"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
CCl4 = derive2 { name="CCl4"; version="1.42.0"; sha256="0n3kx176if48gmw3qd5knlv5q7v7738c54ix8cwr2xhsqc7ah800"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.44.0"; sha256="18bjaqf6cjvjfcp80b5zmb48qbywacqs6aiarsh6ksq2yj4np4zs"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.24.0"; sha256="0pafgk4sagyrsddzg5a0nigs518ki2rikhkj02mngh9x4kipkhip"; depends=[ExperimentHub SummarizedExperiment]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.40.0"; sha256="0gdb08vxna4rhf5lyhjr9prww58sikjiv49i4sy6hgj5a1chz288"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.32.0"; sha256="0xmbgr6iq4nzxw8gvb099c65bxsc0aqfwn55l2hyr7zskqc3apka"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.40.0"; sha256="0wxhsj29yycmfgwl1sxz3yynwwwccxs1n9kcvdd6940jm4rz8nvq"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.40.0"; sha256="0b9w91qvxakrwwgkzfmhd7ily9yy5jmwimiykckksrhf1fr7i7zp"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="1.24.0"; sha256="1f513yxinql9qnxmlcfarhn840bxkbwxjqs661c9zliah26hv2wp"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.36.0"; sha256="09b0a7ss64mx0ag6rwa7nld0hfzhrr7pfy4iimd0isfz1hm55kd8"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.30.0"; sha256="1rw0793g5bj1zwa5wi4f9d7l3y29c88c2s16ia0ph1j72zr0vyrn"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.36.0"; sha256="0x006ilgqrf15135ivxv8qrcyhssl1w6pm1gpnna96za58l2f2rr"; depends=[BiocGenerics GenomicRanges]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.42.0"; sha256="0jfiii3akdsg4drj3x3rmjakzr85bhzdxl5w433qkrzb4dm724q0"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.28.0"; sha256="07m4515g0gq4qv7yyx0qy0y4c2zb1dm30yhkzh43z34m6rkgsf1f"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.42.0"; sha256="04cixcachip43kynlz4l6fh1y0wdzijgipvkz5rvlhqca7mpdqss"; depends=[affy hexbin limma qvalue statmod]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.20.0"; sha256="01r4cfy0ny5vh0x1ihkynyxfxgjsprhim7913vzj0d1kgdkzdr6z"; depends=[]; };
CoSIAdata = derive2 { name="CoSIAdata"; version="1.4.0"; sha256="1mld9j54ywkgz63brf8lmfi57f1hmclyv3m9lw201wyni48nx377"; depends=[ExperimentHub]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.40.0"; sha256="1i7bv10kmmgb355nmp3qsm9awcba69h8chhvcmw718hg5x2axrdh"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.22.0"; sha256="12pw212lrqsas08hzan6sh56iasx74adbnngvyj2dllgc30971i8"; depends=[ExperimentHub Rdpack]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.36.0"; sha256="1ijlba601wknkj6ybbnarcdw1z54f76gkdgynpry1v8jpbpvcadr"; depends=[]; };
CytoMethIC = derive2 { name="CytoMethIC"; version="1.0.0"; sha256="19ms0i2rs0b3lbg71m3k43hy0wx45yif6pv3nnchbafysnlzp04n"; depends=[BiocManager BiocParallel ExperimentHub sesame sesameData tibble]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.34.0"; sha256="055rlbc2sky8am6vcz09vxpj8n34y3lmajlp8n6zz086w7fgfd8d"; depends=[MSnbase]; };
DExMAdata = derive2 { name="DExMAdata"; version="1.12.0"; sha256="17gm48hawh42cdbqr1bbrb7nccx3lwan8nca353vyj43pjr3s46n"; depends=[Biobase]; };
DLBCL = derive2 { name="DLBCL"; version="1.44.0"; sha256="0sakxhj192khn777aspzzckrjnzi89ng5wnzvzxgfdbpwh2nfl4d"; depends=[Biobase graph]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.22.0"; sha256="119r3c2yc5hbj5x0h7r930rwhp0k5rsnfmbmvl2rhz02wq2ychhy"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DNAZooData = derive2 { name="DNAZooData"; version="1.4.0"; sha256="1bs2pnak2v2szp7zly8ysf8pqh7f70w70cbqqzvnxlf35npv7cxd"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.40.0"; sha256="1icjl4rr8jk16hs8ri925v3gf9lasi4x39yf5a7av39byb2zwqif"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.36.0"; sha256="0xjj2ky0k8vazw97qsaf79c6cc3whxg0n5v6lrj6slk4hyfcmbw4"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.42.0"; sha256="0mcz0vdawz62qpdz8dmw359qim0b5wy42wp5r0h5pw05fh03b9bp"; depends=[EBImage]; };
DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.14.0"; sha256="1n98mgzc6dscm6wy18mf0l5l5bvx3m35xdniarv83j8302xra9n1"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.40.0"; sha256="0pmydn60f80ga6la6gxn1l1baw22kqqf1v2gbcniq7qm5axj6vh2"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.22.0"; sha256="042v3dpirp68qsdbhygvx3apx94xxdmzpm0swii30kzkw1r1xfck"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DvDdata = derive2 { name="DvDdata"; version="1.40.0"; sha256="0l298n6fj57yz6ml5xp1gmwxkj200pwsijbxxf2k8f028m4igy0k"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.32.0"; sha256="0448hr7zz1wibi8l3plb9hsr6x0a7hz0pmqchhbzbsqwjjdrsgid"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.28.0"; sha256="1ppmdqc0j3hkngg0nzx18vw8sgnfbrhxyb3l1l5mhv3gq02rslxz"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.42.0"; sha256="109law5cc64xipwqyanw71h8v5nx08s1iaskh05hm1w18dsjxff1"; depends=[GenomicRanges rtracklayer ShortRead]; };
EpiMix_data = derive2 { name="EpiMix.data"; version="1.6.0"; sha256="037kp9ziawdxfxydg4jb64k6klv9j78wp45gi72prisl4hj5hlp3"; depends=[ExperimentHub]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.40.0"; sha256="0vmpgq694jvrcbnx2ik7cyq2axfm7xl3sibd2b9k3dpxaw62gipm"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.32.0"; sha256="0l084k6p8nsnv51fxb55lass72qhjm4ff84i4y3if5p29gzl8frz"; depends=[]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.14.0"; sha256="0g9b5a7l802z6g2s95x4m914hwwn5qqnlxvag3qbvy3bhwx3xyi6"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.40.0"; sha256="0l839hd76xr94qjcnscr9c40nvsx99ir6vsy1zx6dn7cha52mpar"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.40.0"; sha256="0agnkc207bma3h89xxrzcywny664f42vfd63qnmyda4kvdvvk0km"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.42.0"; sha256="0lc45dg5jq0kqycpsggrhi5fa4xj1ciqrj6iw548ccjgdyy2w1xh"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.8.0"; sha256="1b0azyslk2g08i6v1vv2niw32f0zqasw85b9klw83zdy2f5dcdvh"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.32.0"; sha256="1bbx2s8vzkawwpywcc33xbgjbc134q6fqgnflk30sfq1pfpxcmsm"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.20.0"; sha256="14486v4cs3j1jmifsgy3ihpm5x7i9581yz4bwsl3h2a7p86cdsbv"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.30.0"; sha256="1r78j0786bl9420cxcmhw07bzakl71r2kar41bwkd6xwfpj2znj5"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.40.0"; sha256="0h21h2nywy9dfqw3d1xw87wah19nidl8k7d0zqpqxql6agr1p92j"; depends=[minfi]; };
GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.22.0"; sha256="1pwi3bn7xj2m7kg02dwn17rnhirl2qf1d67p2m9194f3iwy4vrp8"; depends=[]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="1.24.0"; sha256="1al1k9c513l3if8kag24dkrmr6m8ajck30gd8yqkcncsrrgc769j"; depends=[]; };
GSE103322 = derive2 { name="GSE103322"; version="1.10.0"; sha256="0iv75phj9s8yyk0h3mnv12aak26kspbqhxvc4dbjjdd4g6jawlgv"; depends=[Biobase GEOquery]; };
GSE13015 = derive2 { name="GSE13015"; version="1.12.0"; sha256="0l1v30g1g93wk5bnhkw52pwypby6n0rxpp11aw93j733whn9j2y4"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; };
GSE159526 = derive2 { name="GSE159526"; version="1.10.0"; sha256="1j8dy1zrw4isscspzb83n7k0x8yaf97zyyfyjh26ff7l997cqdvk"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.32.0"; sha256="041sby283m8ajb96gdg3zcrs0l6760svx8wijxfabq9dygiiaqp8"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.40.0"; sha256="0d1xgjizi58hwbralla62jch3kl4bqx0dg0lhh0h1bk9jyicyqjy"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.42.0"; sha256="08w9qlf6vprvf383mji0hhzpn65jicqmkbljqndh7r7s4hp1z9jr"; depends=[GWASTools]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.12.0"; sha256="16cj8w6n053aciz9wclppmc22b9s4a9lh58r6wi2lhs0sp7iirzn"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.32.0"; sha256="1n9yq4lqs6v9qdw9rm9hy8dww6n5axpkncms2drkjn2hv8xlqgj8"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.20.0"; sha256="1kdp9iwn0vy7hlxyh09vrl6cwj7ajy2zqk23w3rxa5py710prp1q"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HCATonsilData = derive2 { name="HCATonsilData"; version="1.2.0"; sha256="1wg0mvc3gwf80bgsfkvdcnnzy7qbnffbbrcy3f87jyw4a20irpp1"; depends=[base64enc ExperimentHub HDF5Array htmltools rmarkdown S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.44.0"; sha256="0r4nlbz7b70z1ii9wisk8nj218m2j5qmpfj8k2sp8k723gmsg4x0"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.24.0"; sha256="0pmzgp7x1zam3b7agi8mdq14qmx8nln9lnhiglax2pvg2a5n4ii4"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.42.0"; sha256="0nkggzidbzya9g7v412iwjkm6pah5siha1jai48k3hhfa4i51jj7"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.44.0"; sha256="1mrza15digswpqszff88caclfwbwxql7dx6gih4gz72cnpyx3fpj"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.24.0"; sha256="16x7mw5bdsyda1qv0v739pkr8lxq8hga84vhmaa8qnx45pwqyyh0"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.18.0"; sha256="014bf29kg9dizi3p0fdxrs42bf9a0dc2f7zd7yxzvzs3jqvniji2"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.24.0"; sha256="18p8hk2dq26pp4fvcf1m8wsvj1mn66i8nr900knl2n9vs09j70wy"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.32.0"; sha256="1bf9jl9gl10gawv835hp8wxzzs1v9g3y3qzpki63j3dw5yssazh5"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.26.0"; sha256="1zi0605nq51zpgap9jsbkilpxalwlpld0crvxivk6pmgrbavvlf7"; depends=[ExperimentHub]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.30.0"; sha256="19gk0xhvpnqqrr6pxiwyyhszi93pjjfiknfj1gvzdrj81p06qhbh"; depends=[]; };
HiBED = derive2 { name="HiBED"; version="1.2.0"; sha256="0sqxlm2nn8g7qfwhndf79dg7v57ngmznr0b297v59nhhpigs1g2q"; depends=[AnnotationHub dplyr FlowSorted_Blood_EPIC FlowSorted_DLPFC_450k minfi SummarizedExperiment tibble]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.24.0"; sha256="1xndbds4clzpblc6gjz7lr48pkvi3j2m0a9jzavff45ds7aa6jxk"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.40.0"; sha256="1sb384dca5n1lanv5k4idjx1b1hmvfdv1xp14m8k00gcnacgj9v3"; depends=[]; };
HiContactsData = derive2 { name="HiContactsData"; version="1.6.0"; sha256="0q92gvvlx4zx6sxi9sdzwjmwvdzaw6fj0nkr5d4h8j0hv7ycylmi"; depends=[AnnotationHub BiocFileCache ExperimentHub]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.16.0"; sha256="01b09hk33p14lfrrpk0agi6prf9wbv6zs0qn07jdsm63vmawscds"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.40.0"; sha256="0xn3ayh2x04cvwrr476k8vlp8lhk5lxaqg01a0ynkrrc4scf2f99"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.30.0"; sha256="0jnikpd3djps3wp4vd3l9911jkzfm8h5pp0gv8l9bx5s2skkdrw1"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.32.0"; sha256="0s3x2chbr8ik3rhgzmfhaq8xlsnnkzfhjh4p327sn5aar6xhaj67"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.42.0"; sha256="1d0awis142kgx9hi0dggl6gqg17m0awqzn8ncpqh2lwaka372dq8"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.40.0"; sha256="1jpknhp624753rhalf81kvl02k4wj19xpncagzf85c878953vph0"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.42.0"; sha256="0xmyhqaa34chd2fxzbs7rk72wyx086cfhnjjh4lwjmb8acbp9xi8"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.46.0"; sha256="0b9j6bc0dfx5mqyd7z7bzmfp6s59cy4dqr1pxzjy05yyfznbc72p"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.40.0"; sha256="0m4g6vp78zsnzkfjmjfjwvd04505lz55njm7ml7dycwv6lmaxivk"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.32.0"; sha256="09q5m71drbp64n26plr0a9bz71akcs4g7pqqyjmsmjrzi40kx7hr"; depends=[]; };
JohnsonKinaseData = derive2 { name="JohnsonKinaseData"; version="1.0.0"; sha256="1ry5p2zll8hazxil4sa57v50b7xr9bk4p5a509i4mvasb089al3l"; depends=[BiocParallel checkmate dplyr ExperimentHub purrr stringr tidyr]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.24.0"; sha256="1fqybcvwa8dls2kv8mkdydmkw0bzihr3xp3m853mffkdjjsrzkyk"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.42.0"; sha256="1mbvy9x8zp02337sw92hh00vvqcamldqdsdy4zp53qiskrpidkdc"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.30.0"; sha256="1ia8fyas2yfird4a0md85s3ak96hb1pdrvay48zzsmhmpgf1yj44"; depends=[]; };
LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.12.0"; sha256="1cghhh1rv8w7819dzi982q862m6yj62pckx8r925j2di1him9db8"; depends=[ExperimentHub]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.42.0"; sha256="0hx2lfpidg54r6kslz3yx6d1lv4vjdrk6s2whii0070hbr18lvjj"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.36.0"; sha256="0j4vvac93m8vqidwvqczggkfdk07dabycqprhsnmj8f0g8hpaq9v"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.40.0"; sha256="1h0m67ak452bbza0s3dsmh2vi9wdi1mgl4bvflhin1gxcgb6fk6p"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.42.0"; sha256="0gmjpagl71vddsvcx3iwql175lv0lc5m6j071wnwh10z59a9jams"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.30.0"; sha256="0g7p7vn2im6d4gamalfm2lcssdg874fgb23wra5c34dzrzz9nr0v"; depends=[]; };
MACSdata = derive2 { name="MACSdata"; version="1.12.0"; sha256="0wffmyshsylf118xfcdyl8bd5xy9gz726lpx3avmxz3a8x917vbr"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.42.0"; sha256="0x59gbv91d90hasa2gwkv00c06zp8fj4fk18386ajfag0wpvpb2n"; depends=[affy Biobase lumi]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.40.0"; sha256="0x9317wgrhvqwh87d1vls5m06jyzsli2yhkc345n6iwxzz3a0brr"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.42.0"; sha256="1cj563a0fjwdrbrwnfzk7l79mjg95hanp5rs6rvjz30b8s5gmwqm"; depends=[]; };
MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.18.0"; sha256="0rbi0psjwk0jgjpliv0hhjvq9wmwb8w4wgqw45wqba6qfpm70wya"; depends=[Rsamtools]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.40.0"; sha256="1psm5f7wrqwqwxzkmqkaz629i1d7zn2s5zs6sgmhijqp7rzhmhc4"; depends=[]; };
MOFAdata = derive2 { name="MOFAdata"; version="1.20.0"; sha256="1sjpvs2vdmmrr5mkk734502lhs3nr3n0brscvh77y1n42abxy26x"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.22.0"; sha256="0kwjdgf526q63kln6j7a0v6v14x1qx5hlpannpb5grah2lyxz4rw"; depends=[tibble]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.24.0"; sha256="0mrap1whvlzlmbrfg611cq3c9a1w2pq3wmijk842cybsx8az59xd"; depends=[]; };
MerfishData = derive2 { name="MerfishData"; version="1.6.0"; sha256="1i8war9rg7fwjdfhj5xa6sp3lmp30j0di04gckskmz6pk9pjjg4r"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.24.0"; sha256="05cz500r6fhlq5pfviiqj8cfv173027dqsdvhvvi57cbbx3qqn6r"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.24.0"; sha256="01cnm2rf6ls1q5plgazxqkrrw3b6mcrxbq0wrmi0ra8daqh6asi7"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.24.0"; sha256="150i72jrq3qshsh0m20kxdcx7zxz1cgvlk0y2nxnacs1xbdnywxv"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; };
MetaScope = derive2 { name="MetaScope"; version="1.4.0"; sha256="1kaisvhp66g95w4dycw8jzsxh00f2c193rjcla6l5k2dn5rnsyr9"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tibble tidyr]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.36.0"; sha256="1f328mhf9b64scr45c9sshcgnsw9lb1g9in22xx2sak40dspjx2a"; depends=[MethylAid]; };
MethylSeqData = derive2 { name="MethylSeqData"; version="1.14.0"; sha256="197347pavq9hjcpwa9lq66lyjr1jb7mymd9pjz01rr9f77d7rqq5"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; };
MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.6.0"; sha256="00lr183x24yx4xd9cpxvzkcxmqp4dinfi1nz2arqqxnbfcp2s25j"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; };
MouseAgingData = derive2 { name="MouseAgingData"; version="1.0.0"; sha256="1867xjhwbsjlzlm8fq0j8ggbhhym427l7vcx9i9g6zwkda7p64x3"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; };
MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.18.0"; sha256="0adw98vym1jir1jrzaws7zrlfvls6rfl8bvkpq5sjy4crb33lxy2"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.12.0"; sha256="1vkbfni6zyr9qhzxfgfj7c5y639amsgbi3chcnsch36r35bnaxp2"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.40.0"; sha256="0macj01775q3dzqhvsbfb2gkz0s8w49vgbfh2nhpgfykwzx5bwjm"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.24.0"; sha256="1j780dkzv08ajyz0c9dh2ygqsyycyhnzvxl1jrc3gvxdddr1syvj"; depends=[]; };
NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.14.0"; sha256="0lpjxpw5jd4zj9pjd3xjcaxkcn135rbhz628zpl44qrdnmyjg2wk"; depends=[ExperimentHub]; };
NestLink = derive2 { name="NestLink"; version="1.20.0"; sha256="1yh1nivipyrx3h0par8cf943licl1rs47jvfwz1392hi09vji15j"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
NetActivityData = derive2 { name="NetActivityData"; version="1.6.0"; sha256="1jcj9k5mzf30wimwwv4gix85n597bv20bjh32nrha2yqiihp9k34"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.42.0"; sha256="0w3ph610lhxyg1knhsnnxpw32sw2n5p57svpbhqm3zmphx29nw3h"; depends=[annotate Biobase hgu133a_db]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.10.0"; sha256="0qwqpzaqp9m8202sp7pdpii90j9yh97ipk36ivh9ba3s05agwq8p"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.22.0"; sha256="0p0pjgffxc72b3wx6wnn0d0wc27qdp5z6my1xr19604drn7sd20x"; depends=[MultiAssayExperiment]; };
ObMiTi = derive2 { name="ObMiTi"; version="1.12.0"; sha256="061qyy69wlr5zhp3m499lq83dq7rwch8ll3a10vwmmwx1l40n8xa"; depends=[ExperimentHub SummarizedExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.26.0"; sha256="1j2nyrkx9ish1v2yvr8wsahhclpy2mvdnrwnk19fkv8kr1hjwjws"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.32.0"; sha256="12nzy9m96jsal7sfqqdi8q7vq9rb4jc5h3hbl11aq4ik66048dyh"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.44.0"; sha256="0ydb4y2s8kshia7k6mr941f1fc7nsqahm1g86ig3wpcq7al33z1b"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.38.0"; sha256="1wnm4jq5lzz50wzsz9v0kw104c1m67j68qlq6773ikdblsrlq23x"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.38.0"; sha256="0fjzlnzv4fk9a90vnl39shx6d84bv61rc3hda6h18md5al202jyj"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.38.0"; sha256="0w815iqjfv0f0kybr84y3q4xsvxihixbiljsdz09xgafam3l80a3"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.32.0"; sha256="0pwqfmcm0cw0z42571fa8w2lpy5mx516mckvk1dwys2yzdhjj24a"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.40.0"; sha256="1pa6hrkyz1byldlch3h7brw2klxi9v2gg97j6814qiqiv84ms90y"; depends=[]; };
PepsNMRData = derive2 { name="PepsNMRData"; version="1.22.0"; sha256="1yzdpfbfivkyvnw76c24j2rbwfkjsnh0blv2z9x8aj1s0b3m5rjy"; depends=[]; };
PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.18.0"; sha256="1bnzrqcyvhr4cnxkiwlpw5rjhrkbs6lm050yjnm79b2gd2whyk81"; depends=[BiocStyle Biostrings ExperimentHub]; };
ProData = derive2 { name="ProData"; version="1.42.0"; sha256="0ysmv66irrq7q8yzk77kkcrxdrcs1pa0z20dfhcsaqkd84yn74jz"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.30.0"; sha256="0garsf77h2nb1zcy3z8ypk3c95pjjnzhxvfwlznn4i1l6qi45mds"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.34.0"; sha256="054c565wqr3cadym8kmf0wm0k2n3ri6x4bla4zyhra0v8cz6axjb"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.34.0"; sha256="08lj3vcnjg38fnnppa3nsg8sw6gfhklak9prpjxig9yzcg4pggwx"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.32.0"; sha256="0gdsyvfrwsbbm786bkkqxxsc5s3wpn7fyhf4f227gr8sg3l7fkbi"; depends=[]; };
RGMQLlib = derive2 { name="RGMQLlib"; version="1.24.0"; sha256="09149yaw2gpypp0m7cghbjqksbj0ncly8fxlv1n7l2s8kaq5jkdq"; depends=[]; };
RITANdata = derive2 { name="RITANdata"; version="1.28.0"; sha256="0k1rziwpb26y19j2cii9y2vffr0sdkskll41njwpkl5mla5bzylv"; depends=[]; };
RLHub = derive2 { name="RLHub"; version="1.9.0"; sha256="0hm3wplzmmzsygz8dalwf6y798p4g2bssjdsg51w17s2mgm4hl98"; depends=[AnnotationHub ExperimentHub]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.42.0"; sha256="10g42s6wq66fhvrxcwxf08073scpkinfldwwdl03r7lxy1wka426"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.42.0"; sha256="0vm20x1lfgl671rrwvxybcwjgk7falb3d5xi6hiq9jivvbms9120"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.18.0"; sha256="0k5ykbry5si0wc6f1am3ln9pcl842hjrpmmw15j9sm565k5pmvmf"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.42.0"; sha256="1xc5ya20nnrhdkib7590zv5g8q6cppd6qiwglxc6fj26ncdj6s73"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.24.0"; sha256="1s6fjkz0dld7mlb1ylqmrw63jk3k0162rv2li6zkz66gc4aq10p0"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.32.0"; sha256="0ll5zj9d9d3ykkkq7iqq5sfvz8i4dc297nwkjpvjxrlazw28iiyl"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.32.0"; sha256="0rmgg5j4rzqg78i43l9975vhdnh8r23lz78fkwwa94ihpqv1pbic"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.32.0"; sha256="158m31hysybyh3ha5n324srrxzc76bkv9fpblida2znv9sni6c52"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.34.0"; sha256="1s7fss644wkrvimqp2h3hq14gr0gjdqyj92hcrzff2qwyy5fzhky"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.32.0"; sha256="1anwv8cg38lpwfyxicqi8kml9q9gigrc7bzmp163322lxaq79c1q"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.32.0"; sha256="04q23w331vjmmmy2iy79grkgdn03iz53vw8npwx2wq1w8if8xdi4"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.32.0"; sha256="1bgcgsx01s7p24014rp8jiklmml822hxabrgf4xxagx4jzr91fxn"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.34.0"; sha256="19las4v4zg8wbb52wa4zmwpfpn80pyjp1kyvqkhgvpd8m3dj7951"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.34.0"; sha256="03kr2l5l5a7v98rna3a43543b7pqcwc7zhawnh92g3rdabk03w9s"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.24.0"; sha256="0w62ybdiq0dwd11ld48kl178qpd53xbfl51z2jwpi2pj1b86fg9l"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.24.0"; sha256="170wjqnrvmdjcpx0bwwky3j7cxhbqvch781dzl6il2igca9kbqhq"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.18.0"; sha256="1410ks6s7albf6sly8ry0ln58ws9jlfn62amniqqsg46kx4xc4bh"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.22.0"; sha256="0zaask3zpbqh6pmrx4hsi5wz7kkfhbl15xzhz10s8h9m739wm8c0"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.42.0"; sha256="0irg6wrwy82xhlkgj1vphh6ncp9s6qcpp40mxv1vq969qjjchkk9"; depends=[BiocManager biocViews MSnbase R_utils]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.36.0"; sha256="0yn7n3zv9i76abx9wp0vw6wa7iylbrj2ffhzbc3irc104id0i4f9"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.36.0"; sha256="05ffx8a76z9nnl3qhfjf6vfnnc2pqkw2jy4pc0wgqc1y3w9vg60l"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.12.0"; sha256="151ivmy35ff850f1ij403bj5g9jhw8r515jjqbvq182x1cygbdfl"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.36.0"; sha256="1bd5jai5jk1d3mqbx7x05ypfxma8s330na9n5bb9qzwxq7imd50b"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.36.0"; sha256="098vy604ca0g408hl2g0p6kh2zzvzvbmyhbr0z081rbdpvzlnf4f"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.36.0"; sha256="1gm55gmsxna8a53k7a7yd99nzc4mg1kw7l5lnmkipa03lafa2yff"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.18.0"; sha256="1hycjipfz6lr1hs1r7g65l565pcx77sz8bjacg5gdcv3rs1by2ql"; depends=[bookdown knitr rmarkdown]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.36.0"; sha256="18im1j8j1y4hva4wg6vki59j1bifz9apijyi44wngsx68z19az35"; depends=[]; };
SFEData = derive2 { name="SFEData"; version="1.6.0"; sha256="03f7f9jrdszvwqgskk12jqw8mvyrrhcjd5v1nzdiy3csg2fa7nbs"; depends=[AnnotationHub BiocFileCache ExperimentHub]; };
SNAData = derive2 { name="SNAData"; version="1.50.0"; sha256="1l3g5gsiv5s83b6406s23snf62zav75s28nq68s8czbm1rsv6xw5"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.40.0"; sha256="00m10r01sx027pnahw5ck1paplqpwsyq11dkacxq21ssvlc8kbl6"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.34.0"; sha256="0r036vskwlk0mp7bgcbvr7iwffcm7g7imzwh5gri05j5p0rhny72"; depends=[]; };
STexampleData = derive2 { name="STexampleData"; version="1.12.3"; sha256="1c9lbghi1ybilrc7yiff12sjyaqpr8095wdvz941lnf3cmgci79q"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.36.0"; sha256="18pd61cg12ghi8kjh1cjyrd248r20l39drbg9vpqmmcpai5f45wy"; depends=[]; };
SimBenchData = derive2 { name="SimBenchData"; version="1.12.0"; sha256="0a3q2ajr0pzwdabx306c8bia25cbih3hfzd5jgm2cx9f5i37f11v"; depends=[ExperimentHub S4Vectors]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.32.0"; sha256="0h54w7lc8v5jicm6xf5i16pi8rw2fxqvssf7a0ql9qa6bv4c7sqy"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.16.0"; sha256="1kzfzprma01ppbpbzgfgaa3dins2915n3wqsrqapcxfks7zvaciq"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.12.0"; sha256="0xdi5rpqpj07h8j1n7wxfsmvrp6zsnc5rq1b2frdp8x3xdlf5dxn"; depends=[ExperimentHub]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.42.0"; sha256="01k9s97rd78pciv4yaij07zzrijvfidpg6hh4h67mnxc90pg3r8w"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.40.0"; sha256="11jvin7y5ys1lxwfjrwb4vw4gcpj09y0n6rhs87w27gcpj4dk7dm"; depends=[GenomicRanges IRanges S4Vectors]; };
SpatialDatasets = derive2 { name="SpatialDatasets"; version="1.2.0"; sha256="0qg9x657kamqqcifziagp3qrk5h2zh16jl8dprzl7nnrxhp0cra2"; depends=[ExperimentHub SpatialExperiment]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.46.0"; sha256="1bnhag1cck99k6mgfnqddjxjhmpgax76p28hm686jkil416y0y47"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.44.0"; sha256="118v972wwq4h2ww2nlb7mzva3d38c4hzmbq0v28500q2zc1ykv4l"; depends=[affy Biobase]; };
SubcellularSpatialData = derive2 { name="SubcellularSpatialData"; version="1.0.0"; sha256="0lyg6hiv8ch7c8a7zzi02c9fmq2zqif88khhslj15gvg5dznw79v"; depends=[dplyr hexbin Matrix SpatialExperiment]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.40.0"; sha256="0hxmizdgrbv6vqlxj6hn4wiazjf3cwaaq17pagqmjlfxbqb4mlzk"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.40.0"; sha256="1c2jgrh5fsnq4d8aw8p1147jsdz8yi60i3naxsd8kj3s9mn1vfn2"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.28.0"; sha256="0sg9zn06rf63n9z6qggxwrh5mxjg0gq1zjj1fn141d7xdbw1j784"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.24.0"; sha256="1r36f7nvvjjgkgmhha81n2iyr9k4nzy0qkkblm483rgzxav4gqa6"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.24.0"; sha256="07sszvf7wd50gj5sgkj4di9a5y4yqcgi9ykssmp9n16bam1xp0a8"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.24.0"; sha256="0jc6shc18kvd69v8wrgifg3cvi5idv1hlnd4x93njxbj9yyxr8xd"; depends=[Biobase]; };
TENxBUSData = derive2 { name="TENxBUSData"; version="1.18.0"; sha256="19a909cs0z8zy6vwlxxgk76ybj9yrhsxd2z8narf50rv96nyid0s"; depends=[AnnotationHub BiocGenerics ExperimentHub]; };
TENxBrainData = derive2 { name="TENxBrainData"; version="1.24.0"; sha256="1kb5i3xrins9jd40xzyi4sj9nks83vzw1w8pk7ji6kgyjdgm1by6"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.22.0"; sha256="089q81wiq7flr1a72gmj7y1ds73zzc2h96pnjm7s5sbysgy4jgx9"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.12.0"; sha256="08jcq5vq0ki4q6ndpm3799kwiy62j446v4kbfdfw7j7rwgjmhjhs"; depends=[ExperimentHub SpatialExperiment]; };
TENxXeniumData = derive2 { name="TENxXeniumData"; version="1.0.0"; sha256="1zjyry8m4f8xw6apib90rv8lyxhpdy3nqgawshhslv8w8qwk3xs9"; depends=[BumpyMatrix ExperimentHub SpatialExperiment SpatialFeatureExperiment SummarizedExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.14.0"; sha256="0qxm46dryq7c4xrbkhgbfqxqn0p7x1nxklqhkdw8qmklszc2b870"; depends=[BiocFileCache Matrix SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.22.0"; sha256="0gnv8yfksrc59prki6w6xa5pw5nszxkx88i5av3ln21hq5idj4cm"; depends=[ExperimentHub]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.10.0"; sha256="1b1aj06qacvzpabz8r0vkqpm0pp48vx26xx84h5ihzg9232wrqmy"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.40.0"; sha256="18y7vidhgkhpr9nlhxwhhi7z07vj6ii1vwl9c8dyyhzfc8icsmsn"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.42.0"; sha256="0dzb1jazdwx37kx0xwvv9i7rfq1712bifz542x4liahvxjgz7prg"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.34.0"; sha256="1gjnfmsbcj8ndj1fssclzlb5qd482c38gpi0q4x7ls98bk42r44x"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
TransOmicsData = derive2 { name="TransOmicsData"; version="1.0.1"; sha256="0sfpks0wfzlrh5qqg0id5c99l1dzj2l1nd5h3shjhp0lm4f5v8w0"; depends=[S4Vectors]; };
TumourMethData = derive2 { name="TumourMethData"; version="1.2.0"; sha256="1xwm2amlb1vrf3hpdw9387nglc6pbxxdxik56byr5p8856fkjdav"; depends=[ExperimentHub GenomicRanges HDF5Array R_utils rhdf5 SummarizedExperiment]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.28.0"; sha256="0k8fg4bhghva32qk4l6r4g6asdkyl2afx0frbk0f57b2hqix69fb"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.8.0"; sha256="13r0r1whcxzzhlsa3bjsq9kp3csgnynbcrxj06v5s73xf8xify00"; depends=[ExperimentHub SpatialExperiment]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.36.0"; sha256="1yv62ydvlsl52awzn2nsa52vaz4naf4biw57awpmz0cp4rb68kdb"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.16.0"; sha256="0k4zyj9dn5x710a1vv11156brz52yf9lzmlmx9axcfsch5dcvi7x"; depends=[GenomicRanges]; };
WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.6.0"; sha256="0nkh8c329n0jh33wa0knnwi9vvk8na1d3lpm3g5lrzl8624kdllv"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.42.0"; sha256="0n0k6h9b9gkywy6cmlx15g09287aqzvc228j3jgjkv0ljbwsq756"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.20.0"; sha256="1ydd7zxag0cmw7mj38srqs4w6lbp1ic5i8s1ay6pifv14arcncrz"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.42.0"; sha256="16fri51jhp0lm3aj9hw2s6jzxjlxz2qbd36j9zcbcs7sb6jh42jy"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.52.0"; sha256="0srmrb2pf5dhjfm1l1jd06jgnah16qxillxi5zjr8vq7pgvw8x4b"; depends=[affy]; };
airway = derive2 { name="airway"; version="1.24.0"; sha256="0yj9ac58iplcakzw6yyglyiwwhiyslp2hlnszhp3258grvbfvcby"; depends=[SummarizedExperiment]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.40.0"; sha256="1mlps08fra7ssbymwf260c43skp2pzw477mp090ycfaj8ncdzqqp"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.30.0"; sha256="1xfzs1n9wis3r0q4g0hg4amhx4zldbslidx1i4d90vcrgzfdh4x6"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.40.0"; sha256="0mx92gs9065lz0c01mzng9snalvmdb3xbsm1r3f6fnhg478da4yq"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.42.0"; sha256="0l5n1d7x4gc3w2kc6vq0gqxp1wdpa2sn5k75yf5fc802m11nrkd1"; depends=[beadarray Biobase]; };
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.18.0"; sha256="1k8gpql57jps51bh5kdn5j5mgz36a369p4sz37sbqkfrskfs8m91"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.42.0"; sha256="0c7zal2hk7knw2mcfkfh7svz3b6nz98y895mhl3ari986wqpj4nv"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.28.0"; sha256="0c50778lwkapgvwn7nvhjyn7irxn85d97mfyawgfgs9kzyfxx1a3"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.18.0"; sha256="1qv2ajy312diacb3mihc3q7hrrlq48k5vd9v0g6w38cqz6gnz0as"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.42.0"; sha256="00cgkpa6mb32q3xl5clkpdh5rkwx7c81rxmyh2qr0jpwpmd3gjwc"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.24.0"; sha256="0414hiah3yzkcdayb43vz5dafv6samaczg556wyl7ig2275k3q6h"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.20.0"; sha256="15kjgqq7lq94pjqg380swqrkv684kgbpkaikfxxdx4cpgx8sjzn7"; depends=[ExperimentHub SummarizedExperiment]; };
breakpointRdata = derive2 { name="breakpointRdata"; version="1.22.0"; sha256="1hm190ji3s451x2hchmpyzx6v4n8p1n6fdqg7cbzmj19rzsb4wha"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.42.0"; sha256="1i2h0f38skkv1m5gas15jdjw4jl8ma4w1sv74j1x9g1zfl9xq3rg"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.42.0"; sha256="0vnwyqn5wg9iqmgb6zx6rciw62n8bxkdyfxlaggl35dpwwpzdb2f"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.42.0"; sha256="0s2h6qy19jnk5s23r0vkv6j77n5qr7ncanmkz0ybx5qyfyicz9m4"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.42.0"; sha256="0i8xw534hywfa382nyfy94g2fk0nfaid306dxrlijkfbs2b24dy9"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.42.0"; sha256="183dy6c3wqc2m65vihdn840wvnq64vwndwcfsvhw39znqpszhs9k"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.42.0"; sha256="0mvm2a77mss85vi8x3i35d54z70advyshsmadhl6aysrzfiw5ifd"; depends=[]; };
brgedata = derive2 { name="brgedata"; version="1.26.0"; sha256="1h2ka8k12lx4326y50scw80n21xkf67ks7kqs2ss6sbwd536gm61"; depends=[Biobase SummarizedExperiment]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.42.0"; sha256="0g1cfhfjycpv1jmba5jddff88m7pbz1l02kci9w73qzjcnqgpp12"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.42.0"; sha256="06k6r288bqi9dshpdz6qlz0d3p1srz8yc1b0xrar9wy5fckdb97d"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.40.0"; sha256="1vaqqszdx3bfdqm3ckn12w9f474wnyqyi7kz0wrj1y50wnwpm38f"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.42.0"; sha256="1jgcg16v09wpga5zivx221mz2bnl37gwpjhlmq9a8h5vxlqcb9wl"; depends=[Biobase]; };
ccdata = derive2 { name="ccdata"; version="1.30.0"; sha256="0q77dk9rifwpp1c2ga1y3yxf1dwvlkmmn5sw285a1c5h6pipxsj3"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.22.0"; sha256="1njq6i1803avcn2h9p3d2cnp8viwv7jak1b5kfqhcvl8jwwxlr59"; depends=[]; };
celldex = derive2 { name="celldex"; version="1.14.0"; sha256="155hnh62ra06b52xk78f111b10gm34d1djvl5w5mabvrk4vknwj6"; depends=[alabaster_base alabaster_matrix alabaster_se AnnotationDbi AnnotationHub DBI DelayedArray DelayedMatrixStats ExperimentHub gypsum jsonlite Matrix RSQLite S4Vectors SummarizedExperiment]; };
cfToolsData = derive2 { name="cfToolsData"; version="1.2.0"; sha256="0hhc9fn6rm9dnzlvs3lk5v0h5m76knl5nblnda26a36wdwz547ld"; depends=[ExperimentHub]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.28.0"; sha256="1kpc3ljayxycadshdgyzkbagh4vd7cmyqqccy61269skpasdnwbv"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.20.0"; sha256="16mfq2mdwrc40i6wyjc9g897sk2rk0way6shc0nw9d1fkf4fsf8l"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.30.0"; sha256="0v28zg8z5b72hci7rqbvjvcgp979zxnq6xgck4baypmkj9ac5wn3"; depends=[]; };
clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.14.0"; sha256="1asssxa8kw2r5ai14kg06ajzkqfmqfvrp6ydjwgf8pkyc4m53r4p"; depends=[ExperimentHub]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.40.0"; sha256="19dskn9kjk1phn2xlsx4wikwvagv48av6ar845hzwwyq7rzllyy6"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.46.0"; sha256="17h4vcpvll01ggp280bspxsl1swiakfabs6n73874sjnik64wp2q"; depends=[Biobase]; };
crisprScoreData = derive2 { name="crisprScoreData"; version="1.8.0"; sha256="1a5ji6zbvnlbdzcqj4arpi6am7vaq31brxaxawr93knpy4lksd4f"; depends=[AnnotationHub ExperimentHub]; };
curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.16.0"; sha256="0gs68q5gfn0ba6y0p429s8v989cfnnlii9066wvqgd8ixqcig66i"; depends=[]; };
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.20.0"; sha256="1yzxz6wjddf4mn6yw8zlz2yq6rhfs0639widql99hjclni1llxkc"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.20.0"; sha256="1q22clkypj8y6am609h4748z2jc2lhhm8kdcv9s3dzx272dmm0w5"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.40.0"; sha256="0ma11myfh5kddksn81rspjq7l44vn0mgz2c98krpdgfv8qynf6ky"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.32.0"; sha256="0zglh1h9hw6rnpdl4v5v7cmzgcvxa0phfixfwwmi8il0rn40jd68"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.35.0"; sha256="1q6xmp32w39jsw7jrphpygyv63vd640nmpz69nlhhisbbpjd259c"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.12.0"; sha256="1hp1s5v567xidmmpn6jv7i3fid5hwg3i43y9471aabq00nsg67b1"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.42.0"; sha256="0rigr8nwcr60vp164hyjw20dw54mwlfg71m4naiz6m1v47d7cg1i"; depends=[Biobase BiocGenerics]; };
curatedPCaData = derive2 { name="curatedPCaData"; version="1.0.0"; sha256="0wqvg0z19lxyqbbsl7fbq12jgycpqycx45vy24z4sph48kz2ag3w"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment RaggedExperiment rlang S4Vectors]; };
curatedTBData = derive2 { name="curatedTBData"; version="2.0.0"; sha256="03wmr9iyhqwbpmp7azq9im5waxy4viqhx0lsmqpk2bsijmigrg0z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.26.0"; sha256="1xdygjwqgy6kjjxzvsy25bckc0f8j5m42wrj1vrnwy5fp0q7y287"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.44.0"; sha256="06r600sn2ga5jrwahxh3ysv4c713sxi0g6y6v46zpcwilkj10gp3"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.18.0"; sha256="0imajc5kiqf45sjwxagvg5bjvmnrzrk3ls4bflwxj9rnd84v2r62"; depends=[AnnotationHub BiocFileCache curl dplyr ExperimentHub httr2 tibble]; };
derfinderData = derive2 { name="derfinderData"; version="2.22.0"; sha256="14gyw3cii7np0rw9j39hcrij9kcybbrwxwz9qa4wx98ddzfixrcn"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.32.0"; sha256="0qhbdq5j900nmpfbz3bcr4jn9zd43fnr7rd94lsv69dpjmsv7ikw"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.36.0"; sha256="0js94wbi9rfsmwj7q8mbh2fimwpiw45ahb1a1g0300zxzf9y61ax"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.16.0"; sha256="08s961ra7f6q4dag39rgdrg5minvzm58g22r8xkwfiw0hfavacbg"; depends=[bcellViper decoupleR dplyr magrittr]; };
dressCheck = derive2 { name="dressCheck"; version="0.42.0"; sha256="1i6lcf8lxp0v0lpkckx3yhzyzj841w3x6qj3kaxls4bfkzr3hls6"; depends=[Biobase]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.44.0"; sha256="1ihkhfhgqywnp2vxrqpzvm5w3ncy6acwcns2ah1fm8xsq1bvcs5v"; depends=[GEOquery marray]; };
easierData = derive2 { name="easierData"; version="1.10.0"; sha256="0l6qhlaa02d2sqaa0yfxqqm1giga5jppq74sfgrih1ccqh348am7"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.44.0"; sha256="09pk2ay2j5gvk60vavs03cgfhma8bvsynxabkfcvr1hkl87qfl2k"; depends=[affy ecolicdf]; };
emtdata = derive2 { name="emtdata"; version="1.12.0"; sha256="0b3hvggndw3bzddk0vflbn0wx8fr08b6nphjhil1wqlyp3535xk4"; depends=[edgeR ExperimentHub SummarizedExperiment]; };
epimutacionsData = derive2 { name="epimutacionsData"; version="1.8.0"; sha256="06z3lxp8lsr2nqw3yqiddy3h4y6iid3n7s1ykbaz0dpm05vdq8i2"; depends=[]; };
estrogen = derive2 { name="estrogen"; version="1.50.0"; sha256="077mr5xz2w90iik8r6jraip377dbily14rnkpc7njicqnnq1d6m7"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.32.0"; sha256="0hlvvmgm42g0lzsb5kljdfs0fcdpwwz3b3h7x88szg7fzqlvainz"; depends=[Biobase metagenomeSeq]; };
ewceData = derive2 { name="ewceData"; version="1.12.0"; sha256="1xk4i38a1yb3zx42hfh2b427y28103h2mpjvxa03fnwkl0lcb46j"; depends=[ExperimentHub]; };
faahKO = derive2 { name="faahKO"; version="1.44.0"; sha256="0bd93q332m7agqgsfkgsp87wv5fx6g2qsgn2z2n0bfsn3vmjjzc4"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.42.0"; sha256="1wzq802q1i52jh82yh9i2kdbya7qrmcjr646dc78vr6vng2k541s"; depends=[Biobase]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.42.0"; sha256="1dzrbqlgh114m4lvikp638bqmw0yq3rwz9bpb1cfbpqlyji97wx7"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.46.0"; sha256="09lpn8s95rbbmv0zk3mg512ddxdv7gpp16hqyh7krsrfr9r8kjxs"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="1.24.0"; sha256="095fd01jd105826gpv038zwj7p4iz7drbm3gy6r0w329xlv4lpp2"; depends=[SummarizedExperiment]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.30.0"; sha256="1qlwv4v1mgxk444scdvmdpak0rpph51mc4al1qfbavd34l4yq6zc"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.16.0"; sha256="11p2b85h8dmajj0pakmb7i4lr2rx9ghlm8sy3pa696hpqnszimjl"; depends=[]; };
fourDNData = derive2 { name="fourDNData"; version="1.4.0"; sha256="1lixqb8n99w0qwr6hi5sql2r84dnp4zc7lqd6lhj0mgpya85b5zr"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.40.0"; sha256="1dgirbhamg53dmfwc76s5ivclxmy7sjhjm9crzwrj1bzl6056cr3"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.32.0"; sha256="125wyqi4h7kkrhbcn4gknwlw6panian2hfsapwyqfxz0mg6ssg5z"; depends=[abind dplyr EBImage locfit tiff]; };
gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.4.0"; sha256="0wpv9p96qxnk22p7ili8ic4gr8p3wb6jfn4v9f0d4kn385vvfwyp"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; };
gDRtestData = derive2 { name="gDRtestData"; version="1.2.0"; sha256="0kdlqbs5qj6svnhsrhnsd644kcxyd8haws5h4djm4gplyx6vwqyj"; depends=[checkmate data_table]; };
gageData = derive2 { name="gageData"; version="2.42.0"; sha256="1kbs0fz1jnx3grd9mpclbahwbp3749ipwfs8ggl9299bhjrgh9i6"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.42.0"; sha256="01r25gx65a9lcjzbjm6gckzy3hyr70cxswxkvprsbphh7pkll3np"; depends=[Biobase]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.42.0"; sha256="0cphbkq13jknmzs6qyv3cj1m73a1wncnj7znjnymbc0ha7rwcd5i"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.40.1"; sha256="0c8f0sqgrg7rc2vs9id9xzbwwv3zhy6ylqiisji20rw9ipzgv7k8"; depends=[GenomicFeatures rtracklayer txdbmaker]; };
genomationData = derive2 { name="genomationData"; version="1.36.0"; sha256="16mghhik2xzin14d7mqlwfy2dah3ccnga947z9id44vyz906wws7"; depends=[]; };
golubEsets = derive2 { name="golubEsets"; version="1.46.0"; sha256="1rv5y7cj4rpdg8vl0qd3071d12rvgqcffqsf1gx8kmdgz13hi4gl"; depends=[Biobase]; };
gpaExample = derive2 { name="gpaExample"; version="1.16.0"; sha256="0q87x5k8ql01k9m503k87wn5pkrygrilqrsb0aix7xjpxa8aia1n"; depends=[]; };
grndata = derive2 { name="grndata"; version="1.36.0"; sha256="1qkxpljvm9sipphgjygnrynbslyv5rlpvfy34q6w1rqhf6qv0n89"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="2.24.0"; sha256="04ymiclfwwp68h8pzpxrfrb5x9njqknhyhihbcj4v51qzx0y4jid"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.46.0"; sha256="0a8j45fxr3sm4q689v29n9gj60g21pk3ixhv7s9plig12ma7nfnz"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.46.0"; sha256="1afvfh6mckyi575qlp579p1akya4q7h0c9zp28s7n5nyljmh572i"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.46.0"; sha256="0lbrn02lyca76xk2h2iddxpkvsj2kvz37m1dn0l5pwbz6igpllqp"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.46.0"; sha256="0lnzwdcjz5f9imqprkh9qxrakg8qdh3j83bq5qaaq54mdh76kd68"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.46.0"; sha256="03pmlz3cskxf683dpdns258gh8rv33amzpvb9mabbg0jagg2b9lw"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.46.0"; sha256="15npa8h6qpp1i0ir2y6knvzb5f4rn9zimyl6sw24ccqbvimjkf7f"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.42.0"; sha256="1pliyvn6g3gbkiinz4q24ajmq0apw035a2c9xq6b91ccm8m7ddrk"; depends=[Biobase Biostrings IRanges]; };
healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.8.0"; sha256="14gq24z99l04kcn13414zjn17184l3p5l6draxwy3820m9sijzgq"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.42.0"; sha256="01hq1nchjyzps5nvsvpgxrw1vds92fv0sggzlls21ggrjhyrx8kp"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.42.0"; sha256="1p9l32lhk5cvqfgxkk3bdz4s9dcyczh9b0a8rvb2cf6zz0i3l6fh"; depends=[]; };
hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.24.0"; sha256="0akf6y1pwjiffhxgd2s01kmw4aylbfbh9hv8yyfvm3r72j07lbvs"; depends=[Biobase]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.42.0"; sha256="0d6jcyb1v58f1p76mng0l327v6i1cskrgcj4p2r9z2pjbgyicgq2"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.44.0"; sha256="0wlkv4yppzg520zbhk7v19jfxbiran9di0bm10bfb9lizdszwd75"; depends=[]; };
homosapienDEE2CellScore = derive2 { name="homosapienDEE2CellScore"; version="1.0.0"; sha256="1vwasylfqv4xgmhkzykdwhlxh0kk4pl4bcndx5dpn7i386zp6chs"; depends=[BiocGenerics DESeq2 ExperimentHub getDEE2 MatrixGenerics Rtsne S4Vectors SummarizedExperiment]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.44.0"; sha256="0yr4z1j4xaxaby3ka9k6h5bshzn78ymp0ic0ycblbl6zzr0vzym2"; depends=[Biobase hgu133plus2_db]; };
imcdatasets = derive2 { name="imcdatasets"; version="1.12.0"; sha256="135sffkn322g6zp6wz6ri2cg4wj9pwadmv4b6zaaxwximpx5xy04"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; };
kidpack = derive2 { name="kidpack"; version="1.46.0"; sha256="0802kn1n9ivjil19faphg4z4iy0y7n1hmixd9bkfv7livfl8yn0b"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.40.0"; sha256="15prksw8pi302i8qpw3skwljyj3hfm9wld2lzpcgz7nnpzrqm8bc"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.40.0"; sha256="0r5dmd9m8fcbdns3r1vsw4xmxdbjp5gf4klsb148rpgmp5avjar4"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.44.0"; sha256="0in8rkcg1r7mjq3fzhyc8446dc09b1mm371vd6l0x541sj7x4n50"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.42.0"; sha256="1r4xn6r0vwnkfbi49gjrxgdscqdpwpfwzb61mrxa9m1hgjy1dr80"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.30.0"; sha256="1f13r5krfqc2f4gc03dxk8ajxlm62yxif03m0nx8lqxvijgm4abq"; depends=[]; };
mCSEAdata = derive2 { name="mCSEAdata"; version="1.24.0"; sha256="0364bvsx286nsnyp5mh2i7i71dpdlpgn0907hnpxck1hcw19npnn"; depends=[GenomicRanges]; };
macrophage = derive2 { name="macrophage"; version="1.20.0"; sha256="11ydl4srfxbcqnb42kwk783xd74231g6vgp1f0qs3hl8slc1hk1w"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.40.0"; sha256="1vna6vg7md9pl9hfrvbb4pi2rpnm0pm9l3ndh8ifdhqrz2vjhfpz"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.48.0"; sha256="086pkn4x1nr7qqhawhyxdcrh9pnsqdpfgy07zxyf1i2by3b7b0v9"; depends=[]; };
marinerData = derive2 { name="marinerData"; version="1.4.0"; sha256="1blrqzi840vcvdslyxkljbc2ihbx7yvvfxmxcs2kq8590jagl425"; depends=[ExperimentHub]; };
mcsurvdata = derive2 { name="mcsurvdata"; version="1.22.0"; sha256="1pf4vljmfbks31rdhb1088x2lyck5bj1a5ci1z6qam8yi4kzgh1y"; depends=[AnnotationHub Biobase ExperimentHub]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.40.0"; sha256="12x7p2jyzggjfb7v2ax9by5hly84jjkkm6fq3i2ycyryjl8f0p6s"; depends=[]; };
methylclockData = derive2 { name="methylclockData"; version="1.12.0"; sha256="1bwrgib7k71i4i6iq4l71n0z9adq3bg9k8j10bpi79ygn9169np5"; depends=[ExperimentHub ExperimentHubData]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.42.0"; sha256="1l8k9j7gwmg5ml68j0rj903im8q74ksanzfarwcx0hdxx4srsv2j"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.34.0"; sha256="17cg4j5lgn5wf0dcrb71sqf8amkjql5zgvjr85szxlzimkjykfyd"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.26.0"; sha256="0ry0pi7gcdwgfij7sw96pv9krqyq1lx5n81c1prhla45q26w9zpc"; depends=[SummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.12.0"; sha256="0ng0sbdn3y2h7dyn42rq5ci12xx5y3hqb87n7xi7lc1gp1pcxcf2"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.50.0"; sha256="1myxv7cqh7d1rjav9qhwqsmw3s1xh3zm34vbxwprqaqg87dg4bw0"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.30.0"; sha256="1sgcw9gdlgk6dyzw61c0k2q26w7vzbqzyrl5qimx466x76knz4hj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.34.0"; sha256="0mmj48c1djl026g7ckn5k7shvyy7xa0fp7nsavm15a8l4blbq1ri"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.42.0"; sha256="0sy85jkl5z82a7y3fg8a1mfq5cpjq2c5arvwplz427rsi02ppqan"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.42.0"; sha256="1bdcfbjpz60fldj8xq3hwgvdqmv5axc8cl2l57i4xk4piggah22r"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.32.0"; sha256="0pbdx6pg3cdwx6qngn01w46bvvqv2hhyicgi39y182gbwliv0fxl"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="1.24.0"; sha256="16ska3qh5bav3y891gz805pj638j4kx73izv8krpqgpycin719ar"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.44.0"; sha256="0g7mlgks3nfnfipnybs7pvsnmrvmq8888g39badca8pi73q1cm25"; depends=[]; };
msigdb = derive2 { name="msigdb"; version="1.12.0"; sha256="080wm9sjwqhaxqx1r3kly1bi1gvkssqpsadnvabx11w493356qr0"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; };
msqc1 = derive2 { name="msqc1"; version="1.32.0"; sha256="1wac6i792ndmv98rb3k7pz07q4l830yhkfs89ahlcalrah6m9cld"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.34.0"; sha256="0bycprz32ihj7kzy5f31275sd4b855nd9vm34447x5y33wdiq9b9"; depends=[]; };
muleaData = derive2 { name="muleaData"; version="1.0.0"; sha256="0n5q0whp2fad980b72b9z85swkm8dc2r888javkzhb5c9sajz1w0"; depends=[]; };
multiWGCNAdata = derive2 { name="multiWGCNAdata"; version="1.2.0"; sha256="1hpm0hf8yh3308rlfcm5f9hi1mcwgcij1baikrx4nrwn7fgi30l3"; depends=[ExperimentHub]; };
muscData = derive2 { name="muscData"; version="1.18.0"; sha256="1snpzvmxrpzspfl5gy18w2mcdpszq7wn2l3z1mbvjdp8ffh4qv00"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.40.0"; sha256="01rxr4867w2zcy4gmcg868g2xqal5vb4xw2izfmcwplxah5380wv"; depends=[affy Biobase lumi]; };
nanotubes = derive2 { name="nanotubes"; version="1.20.0"; sha256="0gsgs0i3117753pxypr2q8pc3zc8bd3fkp5xj30jx142wvi4y0al"; depends=[]; };
nullrangesData = derive2 { name="nullrangesData"; version="1.10.0"; sha256="099ynygy9ld7ckzh38rf5nglx70mjwha0jz3ngn85ncnaz64cw26"; depends=[ExperimentHub GenomicRanges InteractionSet]; };
oct4 = derive2 { name="oct4"; version="1.20.0"; sha256="0q6q5zg33fxq9cjnxdbc53q4wqsqcgid8ax0z2b8sbyv86knj620"; depends=[]; };
octad_db = derive2 { name="octad.db"; version="1.6.0"; sha256="1n8zwjhf7s61gaqr1zs5gvc5l3xsbzilj38lpsh8k80y175msgbx"; depends=[ExperimentHub]; };
optimalFlowData = derive2 { name="optimalFlowData"; version="1.16.0"; sha256="0b5r3hqs2pnj2s9qizrqpkkidq3r5ig75rmk1ygsppad0dl98qyh"; depends=[]; };
orthosData = derive2 { name="orthosData"; version="1.2.0"; sha256="000jqijl7mpp0qfgg0aqx7jzn5bviybp2ndxmikyn0rmcvi9057k"; depends=[AnnotationHub BiocFileCache ExperimentHub HDF5Array stringr SummarizedExperiment]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.42.0"; sha256="0drc8srg2frzjpq7j00pfr1371n0jiry5gz1rz2hbagcz2q51aad"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.42.0"; sha256="183cyn1i0i2p8npajwmbwzr2ncrrzwgpvh8adhjxzrdqkn3qdnr5"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.32.0"; sha256="0r5i64125qq5z4c8zliazsi68035d1bsz6ingzqdh37m8prdw1cr"; depends=[DEXSeq]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.42.0"; sha256="0q0wawb4hj45lm9z8h0q905dvmx13x25cv64qmm1nf0342m8gccn"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.25.0"; sha256="1mlqkxlkqfb8x5jp2fdx5nfrpfh8g3lghfj6sqkaf958n5yl1dg3"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.42.0"; sha256="17sf3x7mhkjk605hmc0idx1d3pbx49hyfaxzifkc6bq1mmq5113x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.24.0"; sha256="01svdmjhijbmjypp9hzninmagjl24zk4kjigmrjiasfski8yjln5"; depends=[GenomicRanges]; };
plotgardenerData = derive2 { name="plotgardenerData"; version="1.10.0"; sha256="14y5hh4r7j7kkbh7kl6wwh6xyva9pbqxzz4ch7dp7p0kj5kgh52s"; depends=[]; };
prebsdata = derive2 { name="prebsdata"; version="1.40.0"; sha256="0agdmcin4mqigrpm004wvaqd9ciy2kc7di1yiycgdnd4ccglhllk"; depends=[]; };
preciseTADhub = derive2 { name="preciseTADhub"; version="1.12.0"; sha256="0449ppjh29rwykf5i2c8f8sfy9s87p2kxgvylfa016x3g2gbnygw"; depends=[ExperimentHub]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.32.0"; sha256="03pfci7cx5r2lagfzi0j8b2ry9s6c211qamfqlqrx5siw0yxllrx"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.32.0"; sha256="11sl00lfi85gpwh2619w3z54vb0mw05bwcgdblg1c6wnrn17qd9h"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.32.0"; sha256="02kcm3wvz4wrdnn4cfna67gqx7p8765j4j0cl7x08j7qjlnsnq2z"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.32.0"; sha256="1ynjyrcp7d8ywzlfkv2909r1l3ihap4yiamq0jrqa27xh6lvpqfd"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.32.0"; sha256="1f0wzm4hlax0dcx3ibssiq1nmli8zhrp7b2r1znjs38v2p5skx53"; depends=[Biobase]; };
ptairData = derive2 { name="ptairData"; version="1.12.0"; sha256="1w7j8zx0x0kihsv295l389vlxii72z22gyi2mhdfviyay7g4n2gd"; depends=[rhdf5 signal]; };
pumadata = derive2 { name="pumadata"; version="2.40.0"; sha256="0ryrlsfyc64kbcn6mhq5xv09n9dv58d6azhywx21kg01iayrmnvb"; depends=[Biobase oligo puma]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.22.0"; sha256="1a8mzbll0s9w82y4sy153jna6677sdpp3bfzs83qaqpnjymjzfpc"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.24.0"; sha256="030hnp9sghl0f2wfg243ll6myp9gr5zzbwlfzaz8m7q8xk2if363"; depends=[rRDP]; };
raerdata = derive2 { name="raerdata"; version="1.2.0"; sha256="15j7sw3kvgqqb7m4y4kn40p8g8s1f204lfnb5zskkjfakj6c2j03"; depends=[BiocGenerics ExperimentHub Rsamtools rtracklayer SingleCellExperiment]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.26.0"; sha256="1al3v586q2ak77hjbl3xlvrxqs3xid8y06lf601c5diyrd7vp7r7"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.26.0"; sha256="17ia2d5g0zawfpcqvpncw05qshhn09p05j2frxmz0mwjfp7mya27"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.42.0"; sha256="0s75faby72cv6i1y1mj5d3qfvfp6907jinnfm17zvgdvcl0xx06h"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.28.0"; sha256="0bjncqk3h11gcsg8zp64f22xjsbgr20dqangg7h84d9m0rr6x0kg"; depends=[SummarizedExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.10.0"; sha256="0s2w9b9bb1bzqnlhlrgvp17bifhryvymzaid02ypkqaql06d6nyx"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; };
scMultiome = derive2 { name="scMultiome"; version="1.4.0"; sha256="1fiivxs35zanssfkjv83fa898fjr93xgq5g2i9m2qkv2pxqlyan8"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.18.0"; sha256="0jsq037ba4xsb3bwwf021jw2hqv30vb5nrjag97xadx75z5fzqlr"; depends=[alabaster_base alabaster_matrix alabaster_sce AnnotationDbi AnnotationHub BiocGenerics DBI DelayedArray ensembldb ExperimentHub GenomicFeatures GenomicRanges gypsum jsonlite Matrix RSQLite S4Vectors SingleCellExperiment SparseArray SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.16.0"; sha256="03zixwlainshb8q3jsb6w9vah790vq17p742fpa2h8f0vcamqxa4"; depends=[]; };
scaeData = derive2 { name="scaeData"; version="1.0.0"; sha256="0ghd2qyc9kz2d0g0whdy7cpys7j265iq9w7a02mnfwk8s0vplrk5"; depends=[ExperimentHub]; };
scanMiRData = derive2 { name="scanMiRData"; version="1.10.0"; sha256="1h7bla3l5mmydwz6pgq6ja560r02i741k0259f3a5lf07y4rdab6"; depends=[scanMiR]; };
scpdata = derive2 { name="scpdata"; version="1.12.0"; sha256="1mn3a27wmdsn582v6ajavn2fxqqqlv79zyy40zfg6pnza19izpbx"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.36.0"; sha256="0i45qxvbirh4l048a2hzk9iahydsgk6az0yjlfsypa0zq6hcz3cj"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.38.0"; sha256="0g1zwzm38xqdpzfhpbwlw8zcdl8lvyd7pfncgwk7y50w1mblxqah"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.40.0"; sha256="1lkwx3gc7c6scznaf1z62szi4mb944dg1jprp8zlmm51a73w9kp9"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.22.0"; sha256="05k67isysszzfkkbi811dkab0cmxnwz81p2ldcqz3gsq5qin3p1g"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.40.0"; sha256="0yy9pywbr5fjkjc2gaaf8cfw5q2barw1a3yin99a7sphq062lfvj"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.24.0"; sha256="17l63xmdi6zhaqggw45nhpiclag96xjbkngmcqhihfykkrgbb18p"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.18.0"; sha256="11y1dbixj9b91whzq4lrmad5f4f6gqdv70ar4rg20ql1699dx5l5"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.40.0"; sha256="03d7whna1h2ffgci060gqfdwbjwmjg6q3yfd8l6vc25kiblc4igp"; depends=[]; };
smokingMouse = derive2 { name="smokingMouse"; version="1.2.0"; sha256="1z3kbmlqylmaingkcdm6wxlx848zipqfh6kha7f55s6aklgcv5d7"; depends=[]; };
spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.10.0"; sha256="172hgg2wxjc32950lga8fqwygd6x07i0ilsvfp46sd7nmysy6cpn"; depends=[ExperimentHub SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.16.2"; sha256="0bbwh9mfz7iscv8a1jlc7g1c452hv4qr95hwv3z6h2mqf8pcr5g8"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix MatrixGenerics paletteer plotly png RColorBrewer rlang rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.16.0"; sha256="047dbhcfqs0zddmnfpabpjhym86m5zlxnwccidkx0b131wxb22gv"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.40.0"; sha256="0i8rvz2l6hgzd4zcmfzszjck0riy2m34qf2nidrxx6bjza4iqwpy"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.42.0"; sha256="0p6rrnqvdifrajil2akjvrzjm1k7gyywspg5cb5p2k62lyz0f06k"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.8.0"; sha256="131p4s5cgm75f32a5dzyj059aznxjcy76h7h8dbccblqlqxgx1ix"; depends=[BiocGenerics Biostrings jsonlite remotes]; };
tartare = derive2 { name="tartare"; version="1.18.0"; sha256="1wxq6sfzdah29ql9q7w3d35x7bf1bh1417ih55rg07qbs8cnxb9v"; depends=[AnnotationHub ExperimentHub]; };
timecoursedata = derive2 { name="timecoursedata"; version="1.14.0"; sha256="0wjfc5awj4spvwwj3mp1bn3dqngjdnfz7bnlv7azqxmnd4q72ckr"; depends=[SummarizedExperiment]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.42.0"; sha256="0anb8n6kni2i56rhhd6wlvq7am6jifiqfmm6v54yh96i2m3gsbq9"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.42.0"; sha256="0jcjzgazj3z4ls2b0mhi15n1vh4adxv2ysm6x3r8w4a4hzm4gnmg"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.24.0"; sha256="0wv7hlq4v69gwypg9lvkcxf7w191iq8j5rzh2gqvg25ajxhm0bwl"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.32.0"; sha256="02svkikiw72lpnsm3w333py7gwc52qi3qina215rp7fknrsqrw07"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.26.0"; sha256="13vcis52fadfpahw31v2z3p2q47d4yp7yl719mibkwga9iyklgva"; depends=[topdownr]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.10.0"; sha256="1l9gm8jlvall905053mmbn0wd053ssnsxy74gza37w669il85awn"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.42.0"; sha256="01cgv28yyqjg8f86dskafb3xy4ylcl4schcad44f9jpvc6zk48qs"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.32.0"; sha256="15wy0dhs9sbz27ii64b4i0zxlsm6v75m2f32gisdy9f6gnbgwkjg"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.26.0"; sha256="13cdb630w1xy734h15dgpzzk64g1rpr5xwh9q2hvs1z3ljyws8qd"; depends=[]; };
xcoredata = derive2 { name="xcoredata"; version="1.8.0"; sha256="0sn3h2c0h9jpdp17jcxskcqjy31vx6wz2d5xb98ag19cfbimv3nl"; depends=[ExperimentHub]; };
yeastCC = derive2 { name="yeastCC"; version="1.44.0"; sha256="1y3k3dvxrv68pcsdqhyvhxvwnmhm0iv7yr3rc6b0gm8g2nv9kcqm"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.50.0"; sha256="1ila3h87j9l37nvwhabrayxawx3mcklhlr3y9cqzpwkg7iayrplf"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.42.0"; sha256="1m3hrjmibmp8zzcc6acg6m21zq83rpnclya4ivivj60nw6ardbkr"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.40.0"; sha256="16n48lcyl63cmlc796xizf19rmm5qmdic0msaadz12wh743phh3a"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.42.0"; sha256="1jk6451ypys3xskmlm6xpvjxxzrx1g0hnzfcsahf3gqgg63pfj7h"; depends=[]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.24.1"; sha256="0khmilw21jnq2ivl7bh7fwz9nxlphljl5fh4w28q9gzydrv0vxci"; depends=[]; };
ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.38.0"; sha256="1hgc2a7wsbw5ivdjknv82p3pvznq29lm8g4fdxy6dyr781xghs0w"; depends=[affy hexbin limma qvalue statmod]; broken = true; };
ChIC_data = derive2 { name="ChIC.data"; version="1.22.0"; sha256="1akqpqw9ydf23whr346psciyyp9c3r0rsas1rkdkf8g5wrcj9vhk"; depends=[caret genomeIntervals randomForest]; broken = true; };
DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.40.0"; sha256="1bb158bmy7195wnj0wap08g621xbzflvj30pv4l7mwc54lm1vqfx"; depends=[Biobase lumi]; broken = true; };
MIGSAdata = derive2 { name="MIGSAdata"; version="1.24.0"; sha256="1s7fyf8n86a3znacjjs0zf22amw4rlgnvw2idld0np0yz81ggzs2"; depends=[]; broken = true; };
MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; };
RLHub = derive2 { name="RLHub"; version="1.6.0"; sha256="1lx4w9m5ddzx3v4ky7yxiq7ydd0dl7xfh9fcmf53apc6fnql13h2"; depends=[AnnotationHub ExperimentHub]; broken = true; };
RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; broken = true; };
SCATEData = derive2 { name="SCATEData"; version="1.10.0"; sha256="0p0y8mkcg99dpwvp7spxx047kyr7mdflnnlfpb4i232q0yxz2z03"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; broken = true; };
alpineData = derive2 { name="alpineData"; version="1.26.0"; sha256="1337y1y8q5y8yh2r2bji8fz3nhcxbn5s6pfnnkb8kvg8r0avgmkz"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; broken = true; };
brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; };
ccTutorial = derive2 { name="ccTutorial"; version="1.40.0"; sha256="1rqblyk7389xqwzvib2xjyjrc8l3qd2g8z9vj96mrfyr8dpccjjs"; depends=[affy Biobase Ringo topGO]; broken = true; };
gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; broken = true; };
mAPKLData = derive2 { name="mAPKLData"; version="1.34.0"; sha256="0vhysi7wyw7d3vbq4qcq3i3ic953awppg2bix40ywz1459b5p43g"; depends=[]; broken = true; };
plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; broken = true; };
ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; };
pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.14.0"; sha256="1bldyvjsv5wwzasg9sbsivyi7m2ypc17mqjglsl22fjkykm92h4s"; depends=[ExperimentHub]; broken = true; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.38.0"; sha256="0kzmn5hx8ag02pz8b78cq7dbalw2w60y441cjyyvxjgycwcfvmvj"; depends=[]; broken = true; };
stjudem = derive2 { name="stjudem"; version="1.42.0"; sha256="0pcvvvaqalr5jklqy7vzxkp0cd9nj9dk941drgr7ndbqc2navz2c"; depends=[]; broken = true; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; };
}

4485
pkgs/development/r-modules/bioc-packages.nix generated
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4960
pkgs/development/r-modules/cran-packages.nix generated
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321
pkgs/development/r-modules/default.nix
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@@ -310,12 +310,17 @@ let
rmsb = [ self.rstantools ];
gastempt = [ self.rstantools ];
interactiveDisplay = [ self.BiocManager ];
disbayes = [ self.rstantools ];
tipsae = [ self.rstantools ];
TriDimRegression = [ self.rstantools ];
bbmix = [ self.rstantools ];
};
packagesWithNativeBuildInputs = {
adbcpostgresql = [ pkgs.postgresql ];
adimpro = [ pkgs.imagemagick ];
animation = [ pkgs.which ];
Apollonius = with pkgs; [ pkg-config gmp.dev mpfr.dev ];
arrow = with pkgs; [ pkg-config cmake ] ++ lib.optionals stdenv.isDarwin [ intltool ];
audio = [ pkgs.portaudio ];
BayesSAE = [ pkgs.gsl ];
@@ -323,6 +328,7 @@ let
BayesXsrc = with pkgs; [ readline.dev ncurses gsl ];
bioacoustics = [ pkgs.fftw.dev pkgs.cmake ];
bigGP = [ pkgs.mpi ];
bigrquerystorage = with pkgs; [ grpc protobuf which ];
bio3d = [ pkgs.zlib ];
BiocCheck = [ pkgs.which ];
Biostrings = [ pkgs.zlib ];
@@ -344,9 +350,14 @@ let
diversitree = with pkgs; [ gsl fftw ];
exactextractr = [ pkgs.geos ];
EMCluster = [ pkgs.lapack ];
fangs = [ pkgs.cargo ];
fcl = [ pkgs.cargo ];
fftw = [ pkgs.fftw.dev ];
fftwtools = with pkgs; [ fftw.dev pkg-config ];
fingerPro = [ pkgs.gsl ];
Formula = [ pkgs.gmp ];
frailtyMMpen = [ pkgs.gsl ];
gamstransfer = [ pkgs.zlib ];
gdalraster = [ pkgs.pkg-config ];
gdtools = with pkgs; [ cairo.dev fontconfig.lib freetype.dev ];
GeneralizedWendland = [ pkgs.gsl ];
@@ -362,13 +373,20 @@ let
gert = [ pkgs.libgit2 ];
haven = with pkgs; [ zlib.dev ];
hellorust = [ pkgs.cargo ];
hgwrr = [ pkgs.gsl ];
h5vc = with pkgs; [ zlib.dev bzip2.dev xz.dev ];
yyjsonr = with pkgs; [ zlib.dev ];
RNifti = with pkgs; [ zlib.dev ];
RNiftyReg = with pkgs; [ zlib.dev ];
highs = [ pkgs.which pkgs.cmake ];
crc32c = [ pkgs.which pkgs.cmake ];
rbedrock = [ pkgs.zlib.dev pkgs.which pkgs.cmake ];
HiCseg = [ pkgs.gsl ];
imager = [ pkgs.xorg.libX11.dev ];
imbibe = [ pkgs.zlib.dev ];
image_CannyEdges = with pkgs; [ fftw.dev libpng.dev ];
iBMQ = [ pkgs.gsl ];
jack = [ pkgs.pkg-config ];
JavaGD = [ pkgs.jdk ];
jpeg = [ pkgs.libjpeg.dev ];
jqr = [ pkgs.jq.dev ];
@@ -377,7 +395,10 @@ let
kza = [ pkgs.fftw.dev ];
leidenAlg = [ pkgs.gmp.dev ];
Libra = [ pkgs.gsl ];
libstable4u = [ pkgs.gsl ];
heck = [ pkgs.cargo ];
LOMAR = [ pkgs.gmp.dev ];
littler = [ pkgs.libdeflate ];
lpsymphony = with pkgs; [ pkg-config gfortran gettext ];
lwgeom = with pkgs; [ proj geos gdal ];
rsbml = [ pkgs.pkg-config ];
@@ -390,6 +411,7 @@ let
mzR = with pkgs; [ zlib netcdf ];
nanonext = with pkgs; [ mbedtls nng ];
ncdf4 = [ pkgs.netcdf ];
neojags = [ pkgs.jags ];
nloptr = with pkgs; [ nlopt pkg-config ];
n1qn1 = [ pkgs.gfortran ];
odbc = [ pkgs.unixODBC ];
@@ -401,6 +423,7 @@ let
pbdZMQ = [ pkgs.pkg-config ] ++ lib.optionals stdenv.isDarwin [ pkgs.which ];
pcaL1 = [ pkgs.pkg-config pkgs.clp ];
pdftools = [ pkgs.poppler.dev ];
PEPBVS = [ pkgs.gsl ];
phytools = [ pkgs.which ];
PKI = [ pkgs.openssl.dev ];
png = [ pkgs.libpng.dev ];
@@ -425,7 +448,7 @@ let
Rhpc = with pkgs; [ zlib bzip2.dev icu xz.dev mpi pcre.dev ];
Rhtslib = with pkgs; [ zlib.dev automake autoconf bzip2.dev xz.dev curl.dev ];
rjags = [ pkgs.jags ];
rJava = with pkgs; [ zlib bzip2.dev icu xz.dev pcre.dev jdk libzip ];
rJava = with pkgs; [ zlib bzip2.dev icu xz.dev pcre.dev jdk libzip libdeflate ];
Rlibeemd = [ pkgs.gsl ];
rmatio = [ pkgs.zlib.dev pkgs.pkg-config ];
Rmpfr = with pkgs; [ gmp mpfr.dev ];
@@ -454,6 +477,7 @@ let
sdcTable = with pkgs; [ gmp glpk ];
seewave = with pkgs; [ fftw.dev libsndfile.dev ];
seqinr = [ pkgs.zlib.dev ];
smcryptoR = with pkgs; [ cargo rustc which ];
webp = [ pkgs.pkg-config ];
seqminer = with pkgs; [ zlib.dev bzip2 ];
sf = with pkgs; [ gdal proj geos libtiff curl ];
@@ -461,6 +485,10 @@ let
string2path = [ pkgs.cargo ];
terra = with pkgs; [ gdal proj geos ];
tok = [ pkgs.cargo ];
rshift = [ pkgs.cargo ];
arcgisutils = with pkgs; [ cargo rustc ];
arcgisgeocode = with pkgs; [ cargo rustc ];
arcgisplaces = with pkgs; [ pkg-config openssl.dev cargo rustc ];
apcf = with pkgs; [ geos ];
SemiCompRisks = [ pkgs.gsl ];
showtext = with pkgs; [ zlib libpng icu freetype.dev ];
@@ -497,7 +525,7 @@ let
Rsubread = [ pkgs.zlib.dev ];
XVector = [ pkgs.zlib.dev ];
Rsamtools = with pkgs; [ zlib.dev curl.dev bzip2 xz ];
rtracklayer = [ pkgs.zlib.dev ];
rtracklayer = with pkgs; [ zlib.dev curl.dev ];
affyio = [ pkgs.zlib.dev ];
snpStats = [ pkgs.zlib.dev ];
vcfppR = [ pkgs.curl.dev pkgs.bzip2 pkgs.zlib.dev pkgs.xz];
@@ -533,6 +561,7 @@ let
redux = [ pkgs.pkg-config ];
rswipl = with pkgs; [ cmake pkg-config ];
rrd = [ pkgs.pkg-config ];
surveyvoi = [ pkgs.pkg-config ];
Rbwa = [ pkgs.zlib.dev ];
trackViewer = [ pkgs.zlib.dev ];
themetagenomics = [ pkgs.zlib.dev ];
@@ -544,16 +573,19 @@ let
ragg = [ pkgs.pkg-config ];
qqconf = [ pkgs.pkg-config ];
qspray = [ pkgs.pkg-config ];
ratioOfQsprays = [ pkgs.pkg-config ];
symbolicQspray = [ pkgs.pkg-config ];
sphereTessellation = [ pkgs.pkg-config ];
vapour = [ pkgs.pkg-config ];
};
packagesWithBuildInputs = {
# sort -t '=' -k 2
asciicast = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev ];
asciicast = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev libdeflate ];
island = [ pkgs.gsl.dev ];
svKomodo = [ pkgs.which ];
ulid = [ pkgs.zlib.dev ];
unrtf = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev ];
unrtf = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev libdeflate ];
nat = [ pkgs.which ];
nat_templatebrains = [ pkgs.which ];
pbdZMQ = [ pkgs.zeromq ] ++ lib.optionals stdenv.isDarwin [ pkgs.darwin.binutils ];
@@ -572,7 +604,7 @@ let
RMark = [ pkgs.which ];
RPushbullet = [ pkgs.which ];
stpphawkes = [ pkgs.gsl ];
registr = with pkgs; [ icu.dev zlib.dev bzip2.dev xz.dev ];
registr = with pkgs; [ icu.dev zlib.dev bzip2.dev xz.dev libdeflate ];
RCurl = [ pkgs.curl.dev ];
R2SWF = [ pkgs.pkg-config ];
rDEA = [ pkgs.glpk ];
@@ -628,6 +660,7 @@ let
Rsymphony = with pkgs; [ symphony doxygen graphviz subversion cgl clp];
tcltk2 = with pkgs; [ tcl tk ];
rswipl = with pkgs; [ ncurses.dev libxcrypt zlib.dev ];
GrafGen = [ pkgs.zlib ];
tikzDevice = with pkgs; [ which texliveMedium ];
gridGraphics = [ pkgs.which ];
adimpro = with pkgs; [ which xorg.xdpyinfo ];
@@ -670,6 +703,7 @@ let
zlib = [ pkgs.zlib.dev ];
divest = [ pkgs.zlib.dev ];
hipread = [ pkgs.zlib.dev ];
jack = with pkgs; [ gmp.dev mpfr.dev ];
jackalope = with pkgs; [ zlib.dev xz.dev bzip2.dev ];
largeList = [ pkgs.zlib.dev ];
mappoly = [ pkgs.zlib.dev ];
@@ -725,10 +759,13 @@ let
RITCH = [ pkgs.zlib.dev ];
RcppMeCab = [ pkgs.mecab ];
PING = [ pkgs.gsl ];
PROJ = [ pkgs.proj.dev ];
RcppAlgos = [ pkgs.gmp.dev ];
RcppBigIntAlgos = [ pkgs.gmp.dev ];
spaMM = [ pkgs.gsl ];
shrinkTVP = [ pkgs.gsl ];
sbrl = with pkgs; [ gsl gmp.dev ];
surveyvoi = with pkgs; [ gmp.dev mpfr.dev ];
unigd = with pkgs; [ cairo.dev libpng.dev ];
HilbertVisGUI = [ pkgs.gtkmm2.dev ];
textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ];
@@ -739,216 +776,103 @@ let
qqconf = [ pkgs.fftw.dev ];
spFW = [ pkgs.fftw.dev ];
qspray = with pkgs; [ gmp.dev mpfr.dev ];
ratioOfQsprays = with pkgs; [ gmp.dev mpfr.dev ];
symbolicQspray = with pkgs; [ gmp.dev mpfr.dev ];
sphereTessellation = with pkgs; [ gmp.dev mpfr.dev ];
vapour = with pkgs; [ proj.dev gdal ];
MedianaDesigner = [ pkgs.zlib.dev ];
ChemmineOB = [ pkgs.eigen ];
};
packagesRequiringX = [
"accrual"
"ade4TkGUI"
"analogue"
"analogueExtra"
"AnalyzeFMRI"
"AnnotLists"
"AnthropMMD"
"aplpack"
"asbio"
"BAT"
"BCA"
"betapart"
"BiodiversityR"
"bio_infer"
"bipartite"
"biplotbootGUI"
"blender"
"cairoDevice"
"canceR"
"CCTpack"
"cncaGUI"
"cocorresp"
"CommunityCorrelogram"
"confidence"
"constrainedKriging"
"ConvergenceConcepts"
"cpa"
"DALY"
"dave"
"Deducer"
"DeducerPlugInExample"
"DeducerPlugInScaling"
"DeducerSpatial"
"DeducerSurvival"
"DeducerText"
"Demerelate"
"detrendeR"
"diveR"
"dpa"
"dynamicGraph"
"dynBiplotGUI"
"EasyqpcR"
"EcoVirtual"
"exactLoglinTest"
"fat2Lpoly"
"fbati"
"FD"
"feature"
"FeedbackTS"
"FFD"
"fgui"
"fisheyeR"
"forams"
"forensim"
"FreeSortR"
"fscaret"
"gcmr"
"geomorph"
"geoR"
"georob"
"GGEBiplotGUI"
"gnm"
"GrapheR"
"GroupSeq"
"gsubfn"
"GUniFrac"
"gWidgets2RGtk2"
"gWidgets2tcltk"
"HH"
"HiveR"
"ic50"
"iDynoR"
"in2extRemes"
"iplots"
"isopam"
"IsotopeR"
"JGR"
"KappaGUI"
"likeLTD"
"logmult"
"loon"
"loon_ggplot"
"LS2Wstat"
"MareyMap"
"memgene"
"metacom"
"loon_shiny"
"loon_tourr"
"Meth27QC"
"migui"
"miniGUI"
"mixsep"
"MplusAutomation"
"mpmcorrelogram"
"mritc"
"multgee"
"multibiplotGUI"
"OligoSpecificitySystem"
"onemap"
"OpenRepGrid"
"optbdmaeAT"
"optrcdmaeAT"
"paleoMAS"
"pbatR"
"PBSadmb"
"PBSmodelling"
"PCPS"
"pez"
"phylotools"
"picante"
"plotSEMM"
"plsRbeta"
"plsRglm"
"PopGenReport"
"poppr"
"powerpkg"
"PredictABEL"
"prefmod"
"PrevMap"
"r4ss"
"RandomFields"
"rareNMtests"
"rAverage"
"rfviz"
"RclusTool"
"Rcmdr"
"RcmdrPlugin_coin"
"RcmdrPlugin_depthTools"
"RcmdrPlugin_DoE"
"RcmdrPlugin_EACSPIR"
"RcmdrPlugin_EBM"
"RcmdrPlugin_EcoVirtual"
"RcmdrPlugin_EZR"
"RcmdrPlugin_FactoMineR"
"RcmdrPlugin_FuzzyClust"
"RcmdrPlugin_HH"
"RcmdrPlugin_IPSUR"
"RcmdrPlugin_KMggplot2"
"RcmdrPlugin_lfstat"
"RcmdrPlugin_MA"
"RcmdrPlugin_MPAStats"
"RcmdrPlugin_orloca"
"RcmdrPlugin_PcaRobust"
"RcmdrPlugin_plotByGroup"
"RcmdrPlugin_pointG"
"RcmdrPlugin_ROC"
"RcmdrPlugin_sampling"
"RcmdrPlugin_SCDA"
"RcmdrPlugin_SLC"
"RcmdrPlugin_sos"
"RcmdrPlugin_steepness"
"RcmdrPlugin_survival"
"RcmdrPlugin_TeachingDemos"
"RcmdrPlugin_temis"
"RcmdrPlugin_UCA"
"recluster"
"relimp"
"RHRV"
"rich"
"RNCEP"
"RSDA"
"RSurvey"
"simba"
"Simile"
"SimpleTable"
"SOLOMON"
"soundecology"
"spatsurv"
"sqldf"
"SSDforR"
"statcheck"
"StatDA"
"STEPCAM"
"stosim"
"soptdmaeA"
"strvalidator"
"stylo"
"svDialogstcltk"
"svIDE"
"svSocket"
"svWidgets"
"SYNCSA"
"SyNet"
"switchboard"
"tcltk2"
"TestScorer"
"TIMP"
"tkrplot"
"tmap"
"tspmeta"
"tkImgR"
"TTAinterfaceTrendAnalysis"
"twiddler"
"uHMM"
"vcdExtra"
"VecStatGraphs3D"
"vegan"
"vegan3d"
"vegclust"
"x12GUI"
];
packagesRequiringHome = [
"aroma_affymetrix"
"aroma_cn"
"aroma_core"
"avotrex"
"beer"
"ceramic"
"connections"
"covidmx"
"csodata"
"DiceView"
"facmodTS"
"gasanalyzer"
"margaret"
"MSnID"
"OmnipathR"
@@ -1048,6 +972,7 @@ let
"benchmarkfdrData2019"
"bodymapRat"
"clustifyrdatahub"
"CTexploreR"
"depmap"
"emtdata"
"metaboliteIDmapping"
@@ -1069,6 +994,11 @@ let
# this is a straightforward approach. Example where patching was necessary
# -> arrow 14.0.0.2 on CRAN; was lagging behind libarrow release:
# https://github.com/apache/arrow/issues/39698 )
vegan3d = old.vegan3d.overrideAttrs (attrs: {
RGL_USE_NULL = "true";
});
arrow = old.arrow.overrideAttrs (attrs: {
src = pkgs.arrow-cpp.src;
name = "r-arrow-${pkgs.arrow-cpp.version}";
@@ -1157,10 +1087,18 @@ let
preConfigure = "patchShebangs configure";
});
Colossus = old.Colossus.overrideAttrs (_: {
postPatch = "patchShebangs configure";
});
gmailr = old.gmailr.overrideAttrs (attrs: {
postPatch = "patchShebangs configure";
});
heck = old.heck.overrideAttrs (attrs: {
postPatch = "patchShebangs configure";
});
surtvep = old.surtvep.overrideAttrs (attrs: {
postPatch = "patchShebangs configure";
});
@@ -1178,6 +1116,10 @@ let
patchPhase = "patchShebangs configure";
});
RcppGetconf = old.RcppGetconf.overrideAttrs (attrs: {
postPatch = "patchShebangs configure";
});
SpliceWiz = old.SpliceWiz.overrideAttrs (attrs: {
postPatch = "patchShebangs configure";
});
@@ -1203,6 +1145,26 @@ let
patchPhase = "patchShebangs configure";
});
cisPath = old.cisPath.overrideAttrs (attrs: {
hardeningDisable = [ "format" ];
});
HilbertVis = old.HilbertVis.overrideAttrs (attrs: {
hardeningDisable = [ "format" ];
});
HilbertVisGUI = old.HilbertVisGUI.overrideAttrs (attrs: {
hardeningDisable = [ "format" ];
});
MANOR = old.MANOR.overrideAttrs (attrs: {
hardeningDisable = [ "format" ];
});
rGADEM = old.rGADEM.overrideAttrs (attrs: {
hardeningDisable = [ "format" ];
});
rsgeo = old.rsgeo.overrideAttrs (attrs: {
nativeBuildInputs = [ pkgs.cargo ] ++ attrs.nativeBuildInputs;
postPatch = "patchShebangs configure";
@@ -1303,19 +1265,12 @@ let
propagatedBuildInputs = attrs.propagatedBuildInputs ++ [ pkgs.quarto ];
postPatch = ''
substituteInPlace "R/quarto.R" \
--replace "path_env <- Sys.getenv(\"QUARTO_PATH\", unset = NA)" "path_env <- Sys.getenv(\"QUARTO_PATH\", unset = '${lib.getBin pkgs.quarto}/bin/quarto')"
--replace-fail "Sys.getenv(\"QUARTO_PATH\", unset = NA_character_)" "Sys.getenv(\"QUARTO_PATH\", unset = '${lib.getBin pkgs.quarto}/bin/quarto')"
'';
});
# backported patch from 1.9
Rhisat2= old.Rhisat2.overrideAttrs (attrs: {
patches = [ (pkgs.fetchpatch {
url = "https://github.com/fmicompbio/Rhisat2/commit/a0f27b018831b39f080f99e6db8a4b876fd56fc3.patch";
sha256 = "sha256-FbYkP/WFmbfQmxArkHgushgVgY0XSypbK8Z5ivQK8k4=";
}) ];
env = (attrs.env or { }) // {
NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -w";
};
Rhisat2 = old.Rhisat2.overrideAttrs (attrs: {
enableParallelBuilding = false;
});
s2 = old.s2.overrideAttrs (attrs: {
@@ -1335,6 +1290,14 @@ let
];
});
covidsymptom = old.covidsymptom.overrideAttrs (attrs: {
preConfigure = "rm R/covidsymptomdata.R";
});
cubature = old.cubature.overrideAttrs (attrs: {
enableParallelBuilding = false;
});
RVowpalWabbit = old.RVowpalWabbit.overrideAttrs (attrs: {
configureFlags = [
"--with-boost=${pkgs.boost.dev}" "--with-boost-libdir=${pkgs.boost.out}/lib"
@@ -1372,10 +1335,6 @@ let
PKG_LIBS = "-L${pkgs.blas}/lib -lblas -L${pkgs.lapack}/lib -llapack";
});
spMC = old.spMC.overrideAttrs (attrs: {
patches = [ ./patches/spMC.patch ];
});
FLAMES = old.FLAMES.overrideAttrs (attrs: {
patches = [ ./patches/FLAMES.patch ];
});
@@ -1457,7 +1416,7 @@ let
});
rgoslin = old.rgoslin.overrideAttrs (attrs: {
patches = [ ./patches/rgoslin.patch ];
enableParallelBuilding = false;
});
rpanel = old.rpanel.overrideAttrs (attrs: {
@@ -1467,6 +1426,16 @@ let
TCLLIBPATH = "${pkgs.bwidget}/lib/bwidget${pkgs.bwidget.version}";
});
networkscaleup = old.networkscaleup.overrideAttrs (attrs: {
env = (attrs.env or { }) // {
# needed to avoid "log limit exceeded" on Hydra
NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -Wno-ignored-attributes";
};
# consumes a lot of resources in parallel
enableParallelBuilding = false;
});
RPostgres = old.RPostgres.overrideAttrs (attrs: {
preConfigure = ''
export INCLUDE_DIR=${pkgs.postgresql}/include
@@ -1497,6 +1466,16 @@ let
'';
});
FlexReg = old.FlexReg.overrideAttrs (attrs: {
env = (attrs.env or { }) // {
# needed to avoid "log limit exceeded" on Hydra
NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -Wno-ignored-attributes";
};
# consumes a lot of resources in parallel
enableParallelBuilding = false;
});
geojsonio = old.geojsonio.overrideAttrs (attrs: {
buildInputs = [ cacert ] ++ attrs.buildInputs;
});
@@ -1538,6 +1517,18 @@ let
'';
});
nearfar = let
angrist = fetchurl {
url = "https://raw.githubusercontent.com/joerigdon/nearfar/master/angrist.csv";
hash = "sha256-lb+HMHnRGonc26merFGB0B7Vk1Lk+sIJlay+JtQC8m4=";
};
in old.nearfar.overrideAttrs (attrs: {
postPatch = ''
substituteInPlace "R/nearfar.R" --replace-fail \
'url("https://raw.githubusercontent.com/joerigdon/nearfar/master/angrist.csv")' '"${angrist}"'
'';
});
rstan = old.rstan.overrideAttrs (attrs: {
env = (attrs.env or { }) // {
NIX_CFLAGS_COMPILE = attrs.env.NIX_CFLAGS_COMPILE + " -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION";
@@ -1647,6 +1638,15 @@ let
hardeningDisable = [ "format" ];
});
Rbwa = old.Rbwa.overrideAttrs (attrs: {
# Parallel build cleans up *.o before they can be packed in a library
postPatch = ''
substituteInPlace src/Makefile --replace-fail \
"all:\$(PROG) ../inst/bwa clean" \
"all:\$(PROG) ../inst/bwa" \
'';
});
ROracle = old.ROracle.overrideAttrs (attrs: {
configureFlags = [
"--with-oci-lib=${pkgs.oracle-instantclient.lib}/lib"
@@ -1710,14 +1710,37 @@ let
postPatch = "patchShebangs configure";
});
SharedObject = old.SharedObject.overrideAttrs (attrs: {
# backport PR resolving build issues: https://github.com/Jiefei-Wang/SharedObject/pull/17
patches = let inherit (pkgs) fetchpatch; in [
(fetchpatch {
url = "https://github.com/Jiefei-Wang/SharedObject/pull/17/commits/50c4b2964649d7f5a14d843bd7089ab62650fcd3.patch";
sha256 = "sha256-zn535IeOYRvyQ2yxgoGEq2wccrl9xdu9nREmy7sV+PQ=";
})
(fetchpatch {
url = "https://github.com/Jiefei-Wang/SharedObject/pull/17/commits/bf096a39858e9210cbe246d4b136905d4cfbfaf4.patch";
sha256 = "sha256-Z+BZOkFnLgIBiVuPsAHp7bMXzADcvuHV4hILdmLvd+k=";
})
];
});
httr2 = old.httr2.overrideAttrs (attrs: {
preConfigure = "patchShebangs configure";
});
dbarts = old.dbarts.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; };
geomorph = old.geomorph.overrideAttrs (attrs: {
RGL_USE_NULL = "true";
});
gpuMagic = old.gpuMagic.overrideAttrs (_: {
hardeningDisable = ["format"];
});
Rdisop = old.Rdisop.overrideAttrs (_: {
hardeningDisable = ["format"];
});
opencv = let
opencvGtk = pkgs.opencv.override (old : { enableGtk2 = true; });
@@ -1763,6 +1786,10 @@ let
'';
});
oligo = old.oligo.overrideAttrs (_: {
hardeningDisable = ["format"];
});
tesseract = old.tesseract.overrideAttrs (_: {
preConfigure = ''
substituteInPlace configure \

6
pkgs/development/r-modules/generate-r-packages.R
View File

@@ -12,9 +12,9 @@ if ("release" %in% biocVersion$BiocStatus) {
biocVersion <- max(as.numeric(as.character(biocVersion$Bioc)))
}
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/experiment/src/contrib/")
mirrorUrls <- list( bioc=paste0("http://bioconductor.org/packages/", biocVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.org/packages/", biocVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.org/packages/", biocVersion, "/data/experiment/src/contrib/")
, cran="https://cran.r-project.org/src/contrib/"
)

12
pkgs/development/r-modules/patches/rgoslin.patch
View File

@@ -1,12 +0,0 @@
diff --git a/src/cppgoslin/cppgoslin/domain/StringFunctions.h b/src/cppgoslin/cppgoslin/domain/StringFunctions.h
index 70e8544..de5c040 100644
--- a/src/cppgoslin/cppgoslin/domain/StringFunctions.h
+++ b/src/cppgoslin/cppgoslin/domain/StringFunctions.h
@@ -35,6 +35,7 @@ SOFTWARE.
#include "cppgoslin/domain/Element.h"
#include <algorithm>
#include <cctype>
+#include <cstdint>
#define contains_val(X, Y) ((X).find(Y) != (X).end())

8
pkgs/development/r-modules/patches/spMC.patch
View File

@@ -1,8 +0,0 @@
Only in spMC_orig: spMC
diff -ru -x '*~' spMC_orig/src/Makevars spMC/src/Makevars
--- spMC_orig/src/Makevars 2014-09-19 21:23:30.000000000 +0900
+++ spMC/src/Makevars 2014-10-25 18:14:48.366954769 +0900
@@ -1,2 +1,2 @@
PKG_CFLAGS=$(SHLIB_OPENMP_CFLAGS)
-PKG_LIBS=$(SHLIB_OPENMP_CFLAGS) $(BLAS_LIBS) $(LAPACK_LIBS) $(FLIBS)
+PKG_LIBS=$(SHLIB_OPENMP_CFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)