various: move to pkgs/by-name

pkgs/top-level/all-packages.nix

@@ -2575,8 +2575,6 @@ with pkgs;
 
   jl = haskellPackages.jl;
 
-  jkqtplotter = callPackage ../development/libraries/jkqtplotter { };
-
   jpylyzer = with python3Packages; toPythonApplication jpylyzer;
 
   jsbeautifier = with python3Packages; toPythonApplication jsbeautifier;
@@ -3249,8 +3247,6 @@ with pkgs;
 
   safety-cli = with python3.pkgs; toPythonApplication safety;
 
-  sasview = callPackage ../applications/science/misc/sasview { };
-
   segger-jlink-headless = callPackage ../by-name/se/segger-jlink/package.nix { headless = true; };
 
   semgrep = python3.pkgs.toPythonApplication python3.pkgs.semgrep;
@@ -3390,8 +3386,6 @@ with pkgs;
 
   ttfautohint-nox = ttfautohint.override { enableGUI = false; };
 
-  twilight = callPackage ../tools/graphics/twilight { };
-
   twitch-chat-downloader =
     python3Packages.callPackage ../applications/misc/twitch-chat-downloader
       { };
@@ -5694,8 +5688,6 @@ with pkgs;
       })
     );
 
-  minizinc = callPackage ../development/tools/minizinc { };
-
   mkdocs = with python3Packages; toPythonApplication mkdocs;
 
   mold = wrapBintoolsWith {
@@ -6450,8 +6442,6 @@ with pkgs;
     x11Support = false;
   };
 
-  imlibsetroot = callPackage ../applications/graphics/imlibsetroot { };
-
   indilib = callPackage ../development/libraries/science/astronomy/indilib { };
   indi-3rdparty = recurseIntoAttrs (
     callPackages ../development/libraries/science/astronomy/indilib/indi-3rdparty.nix { }
@@ -6963,8 +6953,6 @@ with pkgs;
   openexr = callPackage ../development/libraries/openexr/3.nix { };
   openexr_2 = callPackage ../development/libraries/openexr/2.nix { };
 
-  opencolorio = callPackage ../development/libraries/opencolorio { };
-
   openstackclient = with python313Packages; toPythonApplication python-openstackclient;
   openstackclient-full = openstackclient.overridePythonAttrs (oldAttrs: {
     dependencies = oldAttrs.dependencies ++ oldAttrs.optional-dependencies.cli-plugins;
@@ -11263,8 +11251,6 @@ with pkgs;
     lapack = lapack-ilp64;
   };
 
-  suitesparse = callPackage ../development/libraries/science/math/suitesparse { };
-
   trilinos-mpi = trilinos.override { withMPI = true; };
 
   wolfram-engine = libsForQt5.callPackage ../applications/science/math/wolfram-engine { };