László Kupcsik
8c30825271
rPackages.CNEr: fix build
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Correct type signatures
2025-05-27 21:38:53 +02:00
Justin Bedő
c32298d71b
R: 4.4.3 -> 4.5.0 ( #399350 )
2025-05-25 07:45:13 +10:00
Justin Bedo
cb29e962c1
rPackages.dataverse: fix build
2025-05-24 09:22:24 +10:00
Justin Bedo
773a75618d
rPackages.terra: fix build
2025-05-24 09:08:48 +10:00
Justin Bedő
ddae80275b
rPackages.unrtf: fix build ( #410086 )
2025-05-24 07:40:20 +10:00
Justin Bedő
4882f22be5
rPackages.littler: fix build ( #410083 )
2025-05-24 07:39:50 +10:00
Justin Bedő
cba89c819f
rPackages.ymd: fix build ( #410082 )
2025-05-24 07:39:16 +10:00
Justin Bedő
2880e3d3dc
rPackages.asciicast: fix build ( #410081 )
2025-05-24 07:38:32 +10:00
Bruno Rodrigues
9a91754332
rPackages.s2: fix build
2025-05-23 16:55:41 +02:00
Bruno Rodrigues
6f888917ac
rPackages.unrtf: fix build
2025-05-23 10:59:25 +02:00
Bruno Rodrigues
2ba9f31f1d
rPackages.littler: fix build
2025-05-23 10:49:05 +02:00
Bruno Rodrigues
d25cd773f7
rPackages.ymd: fix build
2025-05-23 10:46:52 +02:00
Bruno Rodrigues
f76b16a6a5
rPackages.asciicast: fix build
2025-05-23 10:42:10 +02:00
Justin Bedo
6ff81c19f8
rPackages: CRAN and BioC update
2025-05-23 09:47:31 +10:00
TomaSajt
cb44e8f36e
rPackages: fix meta.homepage for packages in BiocAnn and BiocExp
2025-05-16 18:34:26 +02:00
Bruno Rodrigues
eae93b5658
rPackages.nanonext: fixed build
2025-05-06 11:53:00 +02:00
Justin Bedő
e3177d45eb
rPackages.rix: 0.15.7 -> 0.16.0 ( #402781 )
2025-05-05 07:25:11 +08:00
Justin Bedő
c1efc3db78
Strict R headers in Bioconductor ( #400924 )
2025-05-05 07:24:20 +08:00
Bruno Rodrigues
366e3d0428
rPackages.rix: 0.15.7 -> 0.16.0
2025-04-29 11:33:36 +02:00
László Kupcsik
fccedfe913
rPackages.AneuFinder: fix build
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Strict R headers are now the default. This removes the legacy
definitions of ‘PI’, ‘Calloc’, ‘Realloc’ and ‘Free’: use ‘M_PI’,
‘R_Calloc’, ‘R_Realloc’ or ‘R_Free’ instead.
2025-04-28 20:30:51 +02:00
László Kupcsik
0c0a3ab35c
rPackages.trigger: fix build
2025-04-28 20:30:01 +02:00
László Kupcsik
0fd362e6bf
rPackages.genoCN: fix build
2025-04-28 20:29:56 +02:00
László Kupcsik
fdca3f8e35
rPackages.cn_farms: fix build
2025-04-28 20:29:52 +02:00
László Kupcsik
cf13f52b70
rPackages.PICS: fix build
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Strict R headers are now the default. This removes the legacy
definitions of ‘PI’, ‘Calloc’, ‘Realloc’ and ‘Free’: use ‘M_PI’,
‘R_Calloc’, ‘R_Realloc’ or ‘R_Free’ instead.
2025-04-28 14:11:29 +02:00
László Kupcsik
37d8d75e88
rPackages.SynExtend: fix build
2025-04-28 14:02:24 +02:00
Justin Bedő
3d76d853a8
rPackages.hypeR: fix build ( #402119 )
2025-04-28 08:30:15 +08:00
Justin Bedő
32e56b1ac6
rPackages.Rmpi: fix build ( #401688 )
2025-04-28 08:25:59 +08:00
Justin Bedő
498afffb7f
rPackages.transmogR: fix build ( #401677 )
2025-04-28 08:24:38 +08:00
Justin Bedő
1fc14b04e7
rPackages.knowYourCG: fix build ( #401674 )
2025-04-28 08:23:43 +08:00
Justin Bedő
f18400c4fb
Update bioc experiment packages ( #401672 )
2025-04-28 08:23:09 +08:00
Justin Bedő
180371ceea
Revert backports ( #401545 )
2025-04-28 08:22:25 +08:00
Justin Bedő
5a6005090a
rPackages.Rigraphlib: add sysdep ( #401466 )
2025-04-28 08:19:17 +08:00
László Kupcsik
e7919a445f
rPackages.hypeR: fix build
2025-04-26 22:16:31 +02:00
László Kupcsik
ee17ad6627
rPackages.Rmpi: fix build
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Needs prted
2025-04-25 11:34:42 +02:00
László Kupcsik
464cb8c0a9
rPackages.transmogR: fix build
2025-04-25 10:53:19 +02:00
László Kupcsik
569efb90e7
rPackages.knowYourCG: fix build
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Added sys deps
Requires updated bioc experiment packages
2025-04-25 10:34:10 +02:00
László Kupcsik
182dc78f39
Update bioc experiment packages
2025-04-25 10:25:50 +02:00
László Kupcsik
81079a9ebc
rPackages.methylKit: fix build
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revert unneeded backport fix
2025-04-24 21:48:47 +02:00
László Kupcsik
efcd750306
rPackages.bandle: fix build
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revert unneeded backport fix
2025-04-24 21:19:39 +02:00
László Kupcsik
483b356575
rPackages.scDDboost: fix build
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Revert unneeded backported fix. It must build on EBSeq fix, because
EBSeq is a dependency as well.
2025-04-24 21:12:58 +02:00
László Kupcsik
ef20fe8eac
rPackages.Rigraphlib: add sysdep
2025-04-24 16:41:13 +02:00
László Kupcsik
c511d9e274
rPackages.EBSeq: fix build
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Remove backported fix
2025-04-21 22:38:42 +02:00
Emily
0fa3429a99
Merge staging-next into staging
2025-04-20 16:14:23 +01:00
Justin Bedő
f2f6eae372
rPackages.DEploid_utils: fixed build ( #399814 )
2025-04-20 10:38:43 +10:00
Justin Bedő
05fda89eff
rPackages.HiCParser: fixed build ( #399781 )
2025-04-20 10:38:16 +10:00
Ihar Hrachyshka
dd0f03a56c
treewide: remove usage of deprecated apple_sdk framework stubs
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They are not doing anything right now. This is in preparation for their
complete removal from the tree.
Note: several changes that affect the derivation inputs (e.g. removal of
references to stub paths in build instructions) were left out. They will
be cleaned up the next iteration and will require special care.
Note: this PR is a result of a mix of ugly regex (not AST) based
automation and some manual labor. For reference, the regex automation
part was hacked in: https://github.com/booxter/nix-clean-apple_sdk
Signed-off-by: Ihar Hrachyshka <ihar.hrachyshka@gmail.com >
2025-04-19 20:28:20 -04:00
Randy Eckenrode
d1a9ab9943
R: get libc++ headers on Darwin from stdenv.cc.libcxx
2025-04-18 19:06:38 -04:00
Bruno Rodrigues
764992ac57
rPackages.DEploid_utils: fixed build
2025-04-18 20:22:16 +02:00
Bruno Rodrigues
6f3a0e785d
rPackages.HiCParser: fixed build
2025-04-18 18:08:35 +02:00
Bruno Rodrigues
d524316b4e
rPackages.BayesChange: fixed build
2025-04-18 18:04:59 +02:00
