Commit Graph

1535 Commits

Author SHA1 Message Date
Justin Bedő
50cee22c41 rPackages.fio: fixed build (#399450) 2025-04-18 17:02:31 +10:00
Justin Bedő
07c1677f1c rPackages.rshift: fixed build (#399449) 2025-04-18 17:00:47 +10:00
Bruno Rodrigues
bd5144b6ff rPackages.fio: fixed build 2025-04-17 13:50:53 +02:00
Bruno Rodrigues
dbb5ac9aa0 rPackages.rshift: fixed build 2025-04-17 13:45:19 +02:00
Justin Bedo
e3a839a678 rPackages.rJava: make build deterministic 2025-04-17 21:25:52 +10:00
Justin Bedő
8b1ad49794 rPackages.rhdf5filters: updated patch (#399400) 2025-04-17 21:10:36 +10:00
Justin Bedo
40835aec4e rPackages.rJava: fix build 2025-04-17 21:06:55 +10:00
Bruno Rodrigues
f68603bec0 rPackages.rhdf5filters: updated patch 2025-04-17 08:44:51 +02:00
Justin Bedo
7bcd11966b rPackages: CRAN and BioC update 2025-04-17 10:44:13 +10:00
Silvan Mosberger
e52d633a63 Merge remote-tracking branch 'upstream/staging-next' into staging 2025-04-02 18:30:54 +02:00
Silvan Mosberger
374e6bcc40 treewide: Format all Nix files
Format all Nix files using the officially approved formatter,
making the CI check introduced in the previous commit succeed:

  nix-build ci -A fmt.check

This is the next step of the of the [implementation](https://github.com/NixOS/nixfmt/issues/153)
of the accepted [RFC 166](https://github.com/NixOS/rfcs/pull/166).

This commit will lead to merge conflicts for a number of PRs,
up to an estimated ~1100 (~33%) among the PRs with activity in the past 2
months, but that should be lower than what it would be without the previous
[partial treewide format](https://github.com/NixOS/nixpkgs/pull/322537).

Merge conflicts caused by this commit can now automatically be resolved while rebasing using the
[auto-rebase script](8616af08d9/maintainers/scripts/auto-rebase).

If you run into any problems regarding any of this, please reach out to the
[formatting team](https://nixos.org/community/teams/formatting/) by
pinging @NixOS/nix-formatting.
2025-04-01 20:10:43 +02:00
nixpkgs-ci[bot]
f079e356d1 Merge staging-next into staging 2025-03-25 00:16:28 +00:00
Justin Bedő
f35051ab52 rPackages.stringi: remove unneeded override (#390167) 2025-03-25 09:21:03 +11:00
Wolfgang Walther
88dfade94b postgresql: replace pg_config with custom script
By replacing upstream's pg_config binary with a shell script, we:
- gain the ability to run pg_config easily when cross-compiling,
- can remove the fake pg_config in the default output,
- can remove the pg_config wrapper script dealing with special cases.

Some 20 years ago, pg_config *was* a shell script upstream, too. It was
changed to a binary, when it was made "relocatable", so it would return
paths depending on the location of the "postgres" binary. However, this
is exactly the thing that just hurts us in nixpkgs - we don't want those
paths to change, we want them to always point at the right outputs. By
writing the script ourselves, this becomes a lot less painful.

This approach means more lines of codes, but all of them are dead simple
and we have a lot less complexity overall.

Additionally, pg_config is now made a separate derivation, only exposed
as "postgresql.pg_config". This has the nice side-effect, that all users
of postgresql and libpq in nixpkgs must be very *explicit* about their
dependency on pg_config. This gives a lot more visibility into the state
of affairs regarding pkg-config support for libpq, which ultimately is
the much better solution.
2025-03-21 18:05:38 +01:00
Gaétan Lepage
ecfbc3e4f2 rstudioWrapper: don't create dangling symlink on darwin (#388779) 2025-03-17 09:45:40 +01:00
TomaSajt
508b581122 rstudioWrapper: don't create dangling symlink on darwin 2025-03-16 23:18:31 +01:00
Bruno Rodrigues
5ce416fd60 rPackages.stringi: remove unneeded override 2025-03-15 16:36:36 +01:00
Wolfgang Walther
7dbeb1be3a various: switch to lighter libpq package instead of postgresql
No need for the full server package when you only need libpq.
2025-03-14 19:03:06 +01:00
Bruno Rodrigues
e9b2dfbb55 rPackages.findpython: add nixpkgs python to list of python_cmds 2025-03-12 07:57:34 +01:00
László Kupcsik
d5cf10fb90 rPackages.graper: fix build 2025-03-11 21:23:52 +01:00
Justin Bedő
f345f8c436 rPackages.scDDboost: fix build (#388523) 2025-03-11 18:30:50 +11:00
Justin Bedő
df97cfa072 rPackages.bandle: fix build (#388316) 2025-03-11 18:28:20 +11:00
Justin Bedő
57e3595018 rPackages.metahdep: fix build (#388009) 2025-03-11 18:26:06 +11:00
László Kupcsik
d4dc93d483 rPackages.scDDboost: fix build 2025-03-09 21:23:56 +01:00
László Kupcsik
a83305a993 rPackages.bandle: fix build 2025-03-09 00:07:12 +01:00
Justin Bedő
3c47a99aad rPackages.gmapR: fix build (#387133) 2025-03-07 21:13:41 +11:00
Justin Bedő
fa01563911 rPackages.minired: mark as broken (#386806) 2025-03-07 21:08:03 +11:00
László Kupcsik
7ab49b94e1 rPackages.gmapR: fix build 2025-03-05 22:41:00 +01:00
László Kupcsik
4c5b9debbd rPackages.metahdep: fix build 2025-03-05 22:25:44 +01:00
Bruno Rodrigues
1b71c4f8a4 rPackages.minired: mark as broken 2025-03-05 20:11:45 +01:00
Bruno Rodrigues
b99e8d923b rPackages: fix place of rPackages.arrow comment 2025-03-05 20:08:32 +01:00
Justin Bedő
79bc0ef8fe rPackages.EBSeq: backport fix (#387137) 2025-03-05 18:55:32 +11:00
Justin Bedő
8f99bd12bd rPackages.fangs: fixed build (#387007) 2025-03-05 18:54:07 +11:00
Justin Bedő
7a1e72be6b rPackages.cpp11bigwig: fixed build (#387003) 2025-03-05 18:53:00 +11:00
Justin Bedő
a4ce1e8d24 rPackages.flint: fixed build (#387000) 2025-03-05 18:52:15 +11:00
Justin Bedő
9ed401a6af rPackages.arcpbf: fixed build (#386996) 2025-03-05 18:51:34 +11:00
Justin Bedő
fc05312035 rPackages.watcher: fixed build (#386967) 2025-03-05 18:50:54 +11:00
Justin Bedő
bcb97c10d7 rPackages.xdvir: fixed build (#386965) 2025-03-05 18:50:16 +11:00
Justin Bedő
9c4e9b53bd rPackages.parseLatex: fixed build (#386964) 2025-03-05 18:49:46 +11:00
Justin Bedő
19c504547c rPackages.salso: fixed build (#386962) 2025-03-05 18:49:19 +11:00
Justin Bedő
f7738447e4 rPackages.awdb: fixed build (#386960) 2025-03-05 18:48:10 +11:00
Justin Bedő
59dd8b5fa3 rPackages.tergo: fixed build (#386959) 2025-03-05 18:47:22 +11:00
Justin Bedő
9c4029a77c rPackages.redatamx: fixed build (#386820) 2025-03-05 18:46:29 +11:00
Justin Bedő
436ae23024 rPackages.pannotator: fixed build (#386796) 2025-03-05 18:43:17 +11:00
László Kupcsik
2debac024e rPackages.EBSeq: backport fix 2025-03-05 00:34:44 +01:00
László Kupcsik
6b9f15e4b3 rPackages.SharedObject: fix build
Remove backport patches
2025-03-04 23:54:30 +01:00
Bruno Rodrigues
30ce03f656 rPackages.fangs: fixed build 2025-03-04 13:52:24 +01:00
Bruno Rodrigues
a481134519 rPackages.cpp11bigwig: fixed build 2025-03-04 13:42:36 +01:00
Bruno Rodrigues
ba049fb493 rPackages.flint: fixed build 2025-03-04 13:38:11 +01:00
Bruno Rodrigues
fc8a513efa rPackages.arcpbf: fixed build 2025-03-04 13:29:36 +01:00