mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-11-05 04:10:19 +00:00
219 lines
4.7 KiB
Nix
219 lines
4.7 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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pythonAtLeast,
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# build-system
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cmake,
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cython,
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ninja,
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pkg-config,
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scikit-build-core,
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# native dependencies
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c-blosc2,
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# dependencies
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msgpack,
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ndindex,
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numexpr,
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numpy,
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httpx,
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threadpoolctl,
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pydantic,
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rich,
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# optional dependencies
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fsspec,
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h5py,
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hdf5plugin,
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matplotlib,
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pyarrow,
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textual,
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textual-image,
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textual-plotext,
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zarr,
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# tests
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psutil,
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pytestCheckHook,
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pytest-asyncio,
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pytest-xdist,
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torch,
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runTorchTests ? lib.meta.availableOn stdenv.hostPlatform torch,
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}:
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let
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sleefRev = "7623d6cfa2712462880fa63a4d0f0b5f775d1a83";
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miniexprRev = "f0b8c94771cd21d3c9029d6ccec204ab3a67584f";
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tinyccRev = "695ad1e6b5c9a00875192ca1f3a9c4949dee4858";
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in
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buildPythonPackage rec {
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pname = "blosc2";
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version = "4.14.1";
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pyproject = true;
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srcs = [
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(fetchFromGitHub {
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owner = "Blosc";
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repo = "python-blosc2";
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tag = "v${version}";
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hash = "sha256-SZMsRGkg2Xqo6eKCxwsNWGteeUnM4KtT5Z/0CS0QDPI=";
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})
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(fetchFromGitHub {
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name = "miniexpr";
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owner = "Blosc";
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repo = "miniexpr";
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rev = miniexprRev;
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hash = "sha256-s84xa/94CHq7bu6mw9XU7Q8TfmSFpdhpLxHOG1XrMu4=";
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})
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(fetchFromGitHub {
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name = "sleef";
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owner = "shibatch";
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repo = "sleef";
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rev = sleefRev;
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hash = "sha256-a0OB2gQI8RlR7liXdlOZo4xDl3f2p9thrCm8CwD2jRM=";
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})
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(fetchFromGitHub {
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name = "tinycc";
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owner = "Blosc";
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repo = "minicc";
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rev = tinyccRev;
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hash = "sha256-qLomeOAw0ipIJOo8/GtBEa1ZsjVtEDlb3/ph7uMcsZk=";
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})
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];
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sourceRoot = "source";
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nativeBuildInputs = [
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cmake
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ninja
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pkg-config
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];
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# perform parameter expansion for CMAKE_ARGS
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preUnpack =
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let
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cmakeArgs = toString [
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(lib.cmakeBool "USE_SYSTEM_BLOSC2" true)
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(lib.cmakeFeature "FETCHCONTENT_SOURCE_DIR_MINIEXPR" "$PWD/miniexpr")
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(lib.cmakeFeature "FETCHCONTENT_SOURCE_DIR_SLEEF" "$PWD/sleef")
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(lib.cmakeFeature "FETCHCONTENT_SOURCE_DIR_TINYCC" "$PWD/tinycc")
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];
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in
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''
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export CMAKE_ARGS="${cmakeArgs}"
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'';
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postUnpack = ''
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# ensure our separately pinned versions correspond to those in source
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if ! grep -F '${miniexprRev}' source/CMakeLists.txt ; then
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echo 'Expected to find ${miniexprRev} in source/CMakeLists.txt:' \
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'has miniexpr source been updated to match pinned version?'
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exit 1
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fi
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if ! grep -F '${sleefRev}' miniexpr/cmake/MiniexprFetchDeps.cmake ; then
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echo 'Expected to find ${sleefRev} in miniexpr/cmake/MiniexprFetchDeps.cmake:' \
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'has sleef source been updated to match pinned version?'
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exit 1
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fi
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if ! grep -F '${tinyccRev}' miniexpr/cmake/MiniexprFetchDeps.cmake ; then
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echo 'Expected to find ${tinyccRev} in miniexpr/cmake/MiniexprFetchDeps.cmake:' \
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'has tinycc source been updated to match pinned version?'
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exit 1
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fi
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'';
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dontUseCmakeConfigure = true;
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build-system = [
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cython
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numpy
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scikit-build-core
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];
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buildInputs = [ c-blosc2 ];
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dependencies = [
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msgpack
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ndindex
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numexpr
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numpy
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threadpoolctl
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pydantic
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rich
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httpx
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]
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++ httpx.optional-dependencies.http2;
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nativeCheckInputs = [
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psutil
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pytestCheckHook
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pytest-asyncio
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pytest-xdist
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h5py
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pyarrow
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textual
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textual-plotext
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]
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++ lib.optionals runTorchTests [ torch ];
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disabledTestMarks = [
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"network"
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"heavy"
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];
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disabledTests = [
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# attempts external network requests
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"test_with_remote"
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# segfaults, but only under nix sandbox
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"test_dsl_save_clamp"
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]
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++ lib.optionals (pythonAtLeast "3.14") [
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# https://github.com/Blosc/python-blosc2/issues/551
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"test_expand_dims"
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];
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# otherwise attempts to find package files for doctests
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enabledTestPaths = [ "tests" ];
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disabledTestPaths = [
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# Threads grow without limit
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# https://github.com/Blosc/python-blosc2/issues/556
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"tests/ndarray/test_lazyexpr.py"
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"tests/ndarray/test_lazyexpr_fields.py"
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"tests/ndarray/test_reductions.py"
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];
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optional-dependencies = rec {
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fsspec = [
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fsspec
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fsspec.optional-dependencies.http
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];
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hdf5 = [
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h5py
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hdf5plugin
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];
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hires = tui ++ [
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matplotlib
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textual-image
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];
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parquet = [ pyarrow ];
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tui = [
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textual
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textual-plotext
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];
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zarr = [ zarr ];
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};
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passthru.c-blosc2 = c-blosc2;
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meta = {
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description = "Python wrapper for the extremely fast Blosc2 compression library";
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homepage = "https://github.com/Blosc/python-blosc2";
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changelog = "https://github.com/Blosc/python-blosc2/releases/tag/${(builtins.head srcs).name}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [ ris ];
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};
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}
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