mirror of
https://github.com/NixOS/nixpkgs.git
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91 lines
1.8 KiB
Nix
91 lines
1.8 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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fetchpatch,
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# build-system
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setuptools,
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# dependencies
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autograd,
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autograd-gamma,
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formulaic,
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matplotlib,
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numpy,
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pandas,
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scipy,
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# tests
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dill,
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flaky,
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jinja2,
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psutil,
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pytestCheckHook,
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scikit-learn,
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sybil,
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}:
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buildPythonPackage (finalAttrs: {
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pname = "lifelines";
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version = "0.30.3";
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pyproject = true;
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__structuredAttrs = true;
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src = fetchFromGitHub {
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owner = "CamDavidsonPilon";
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repo = "lifelines";
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tag = "v${finalAttrs.version}";
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hash = "sha256-A9MsQN/JGCQ4cYNIZI5LBKpRb44uI/SM8eT4/nKpsXQ=";
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};
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patches = [
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# pandas 3.0 compatibility
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# https://github.com/CamDavidsonPilon/lifelines/pull/1684
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(fetchpatch {
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name = "pandas-3-compat.patch";
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url = "https://github.com/CamDavidsonPilon/lifelines/commit/755db6f1e018056b14282885e010274d9f91755a.patch";
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hash = "sha256-T9NLs3R1+G6gWam+DU/rCOYVyQpq9YjkoWgCh2KUxm4=";
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})
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];
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build-system = [ setuptools ];
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dependencies = [
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autograd
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autograd-gamma
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formulaic
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matplotlib
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numpy
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pandas
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scipy
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];
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pythonImportsCheck = [ "lifelines" ];
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nativeCheckInputs = [
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dill
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flaky
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jinja2
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psutil
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pytestCheckHook
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scikit-learn
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sybil
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];
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disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [
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# AssertionError: Not equal to tolerance rtol=0.01, atol=0
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"test_score_method_returns_same_value_for_unpenalized_models"
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"test_that_adding_strata_will_change_c_index"
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];
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meta = {
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description = "Survival analysis in Python";
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homepage = "https://lifelines.readthedocs.io";
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changelog = "https://github.com/CamDavidsonPilon/lifelines/blob/${finalAttrs.src.tag}/CHANGELOG.md";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ swflint ];
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};
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})
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